Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20astronyxis_20[genbank_20GCA_5F000826245.1_202015-01- 07] 98,248 sequences; 83,432,518 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq97207 98.7 2e-18 seq53072 95.1 2e-17 seq64481 86.0 1e-14 seq20861 86.0 1e-14 >seq97207 Length=4613 Score = 98.7 bits (108), Expect = 2e-18 Identities = 96/121 (79%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||| | |||||| |||||||||| ||| | || | | | |||| Sbjct 527 GTACGAGAGGAACAGTC-AATTCA-AATAATTGGTATTTTCCTTTGGCCAAAAGGCCAGT 584 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | | |||||||||||||| |||||||||||||||||||||||| |||||||| ||| | Sbjct 585 GGGGAGAAGCTACCATCTGTGGGATTATGGCTGAACGCCTCTAAGCCAGAATCCGTGCTA 644 Query 121 G 121 | Sbjct 645 G 645 >seq53072 Length=127 Score = 95.1 bits (104), Expect = 2e-17 Identities = 83/102 (81%), Gaps = 1/102 (1%) Strand=Plus/Plus Query 20 ATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTG 79 ||||||| |||||||| ||| | || | || | ||||| | |||||||||||||| Sbjct 4 ATTCAGA-TAATTGGTATTTTCCTTTGGCCGAAAGGCCAGTGAGGAGAAGCTACCATCTG 62 Query 80 CTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAG 121 ||||||||||||||||||||||||| |||||||| ||| || Sbjct 63 TTGGATTATGGCTGAACGCCTCTAAGCCAGAATCCGTGCTAG 104 >seq64481 Length=127 Score = 86.0 bits (94), Expect = 1e-14 Identities = 81/102 (79%), Gaps = 1/102 (1%) Strand=Plus/Plus Query 20 ATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTG 79 ||||||| |||||||| ||| | || | || | ||||| | |||||||| ||||| Sbjct 11 ATTCAGA-TAATTGGTATTTTCCTTTGGCCGAAAGGCCAGTGAGGAGAAGCTACAATCTG 69 Query 80 CTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAG 121 |||||||||||||||||||||||| |||||||| ||| || Sbjct 70 TGGGATTATGGCTGAACGCCTCTAAGCCAGAATCCGTGCTAG 111 >seq20861 Length=127 Score = 86.0 bits (94), Expect = 1e-14 Identities = 81/102 (79%), Gaps = 1/102 (1%) Strand=Plus/Plus Query 20 ATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTG 79 ||||||| |||||||| ||| | || | || | ||||| | |||||||||||||| Sbjct 3 ATTCAGA-TAATTGGTATTTTCCTTTGGCCGAAAGGCCAGTGAGGAGAAGCTACCATCTG 61 Query 80 CTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAG 121 ||||||||||||||||||||||| |||||||| ||| || Sbjct 62 TGTGATTATGGCTGAACGCCTCTAAGCCAGAATCCGTGCTAG 103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 818420303872