Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20astronyxis_20[genbank_20GCA_5F000826245.1_202015-01- 07] 98,248 sequences; 83,432,518 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq97584 260 1e-64 seq96149 174 1e-38 >seq97584 Length=40438 Score = 260 bits (288), Expect = 1e-64 Identities = 1120/1748 (64%), Gaps = 58/1748 (3%) Strand=Plus/Plus Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136 ||| || ||||||||||| || | ||| || | ||| | || ||||||||||| || Sbjct 28137 ATCAACGGTGAACTGGATGGCGTCAGCGGCAGGGCGGGTGCGTAGGTAGTACATGCCAGT 28196 Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTC 65196 ||| ||||| ||| || || || |||||||| | | | | || | ||||| Sbjct 28197 CTTTAGGCCCTTCTTCCATGCGTAAAAGTGCATCGACGTGAGTCTGGCGAATGAGGGCTC 28256 Query 65197 GGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCAT 65256 |||| || | || | ||| || || |||||||| | || || || ||||| Sbjct 28257 TGCCATATATACGTTTAGGCTCTGGCTTTGGTCGATGTACGCTGCTCGGTCAGCTGCCAT 28316 Query 65257 GTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCAAT 65316 ||| | || | ||| | |||||||| || || ||||||| ||| | ||| | Sbjct 28317 GTCTAAGAGAATACGCTGAGGAATCTCCCAAACTGTTTTGTACAAGCGCTTGAGCTCGCT 28376 Query 65317 TGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATCGA 65376 ||| ||||| || ||| | || || || ||| | |||| || || ||| | Sbjct 28377 TGGGATCTCGTCTATGGCTTGCACGGATCCATTGTGCGCAACAAGCTTGTTCTTCATTGC 28436 Query 65377 CTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTGGAA 65436 | ||||| ||||| | || |||| | |||||| ||||| || || Sbjct 28437 ATGATTCCACAGACCCAGTGCCATCAGATCCCTGAGCAAGTGTTCGTTGATCACCGTAAA 28496 Query 65437 CTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCAGT 65496 || || | || | || | ||||| || || ||| || |||||| | ||| | Sbjct 28497 GTCTCCAGCCAAGATGCGCCTTGTGTAGATATTAGAAGTGTAAGGCTCAAAGCACTCATT 28556 Query 65497 GTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTTTCG 65556 ||||||||| || |||| |||||| || || ||||| || || |||| ||| ||| || Sbjct 28557 GTTGCCTAGTATCTGGGAAGTAGAAGCCGTCGGCATAGGTGCAACCAGCAAGCTGTTGCG 28616 Query 65557 CAATCCGTTCATTTCAATG-TTG---TGACGCAATTCGTCCCAGTTCCACATCGGTTTAT 65612 || |||| | ||||| ||| ||| | | | |||| | ||| | || || Sbjct 28617 CAGACCGTGTTCTACAATGCTTGCCTTGAGGGA----GGCCCAATCCCA-ACGGGAGGAT 28671 Query 65613 CG-TCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACCG 65671 | || |||| | |||||||| || || | || | || | || || ||| Sbjct 28672 GGCTCAACATTC------CACATATCAAACTGTAGTATGCCTTTGCTCGTTGGAGAGCCG 28725 Query 65672 AGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTT-GACAGCTGGTCTCGAGTGCGGC 65730 || | ||| || | |||||| || || | | | || | | ||| ||||| Sbjct 28726 GCAAATGTGGGGTAGGGCCCTTGCTCCTTTGCCAGCTCGTTGGATGATGT-GAGAGCGGC 28784 Query 65731 AAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGG 65790 |||||| || |||||||||||| || || || | |||||||| ||||| || | || Sbjct 28785 AAAATAGATTGTCTCGAAAATGTCGCGGTTGAGGGCGCGTGCCTCTTCGCTGTCCCAAGG 28844 Query 65791 CATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATG 65850 ||| | || || | || ||| || ||||| || ||||||| || || || | || Sbjct 28845 CATGCGCAAGAGAAGGAAGACGTCAGCAAGACCCTGTACTCCAAGGCCAATAGGCCTGTG 28904 Query 65851 ACGCAAATTGGAACGTCTCGCCT-CAGGTACAGGGTAGTAATTGATATCGATAATGCGAT 65909 ||| ||||| | |||| || | | || |||||||| |||| || || | | Sbjct 28905 ACGTCTGTTGGAGTG-CTCGGCTTCTGCAACTGGGTAGTAGTTGACGTCTATTACCTTGT 28963 Query 65910 TCAAATTGCGTGTCACCACATGCACGATACGTCGCAATTGTTC--GAAATCAAAATGTTT 65967 |||| ||||| || ||||| | || | | || | ||| | |||||| Sbjct 28964 TCAAGTTGCGCGTGACCACCTTGACCA--CCTCAAAGAGCTTCTCGTGATCAAAT----- 29016 Query 65968 AGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCA 66027 || || | | ||||| | || || || || | || ||||| || || Sbjct 29017 ---ACCATTT----TCTCTTTGTCCACATATTTAGGCAGAGCCATTGAAGCGAGATTACA 29069 Query 66028 GACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCG 66087 || || | || | || | || ||| ||||||||| ||||| || || || | Sbjct 29070 TACGGCCACTTCTTTGGGTGATGTGAACTGGACAATTTCAGTGCAAAGGTTGGAACATTG 29129 Query 66088 TATGGTGCCCAAATTCTGTTGATTACTCTT-GCGATTGCATGCATCCTTGTACATCATGT 66146 |||||||| | | ||| || || || ||| ||||| ||||||||| | ||| | Sbjct 29130 AATGGTGCCGAGGTGCTGGTGGTTGGATTTCGCG-TTGCAGTGATCCTTGTAGAGCATAT 29188 Query 66147 ACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCA 66206 | || || |||||||| | ||||| || | |||||| |||||| | | ||||| | Sbjct 29189 AAGGGGTACCGGTCTCTATTTGGGCTTCCAAGATGGCAAACCAAAGCTCTTGAGCCTTAA 29248 Query 66207 CCGTACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCA- 66265 | | |||| || | || | ||| || || || ||| || | || || |||| Sbjct 29249 CAGCACGTCTTGCACGGCCCTCGCGCTCATAGCGTGTGTACAGCTCCTCAAA---TTCAG 29305 Query 66266 --CCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCAT 66323 |||||| || |||| ||| || | ||||| | ||| ||||| || || | Sbjct 29306 CTCCCCATTTGTCTTGAAGACCTGGTGCCTCATTGGGACAAAACAGTGACCAGTCTCC-T 29364 Query 66324 CCTGT-TCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGT 66382 |||| || || | ||| || ||||| |||| ||| || || | ||||||||| | Sbjct 29365 CCTGCCTCCACTCTCTCCATGAACAGATCGGGTACCCACAGAGCATGGAAGAGATCTCTG 29424 Query 66383 GCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCA 66442 ||||| ||||| || ||||||| || || || || | |||||||||||||| || Sbjct 29425 GCTCGCTGCTCTTCCTTGCCGTGGTTCTTTTTCAGCTCCAAAAACTCAAAGATGTCCGCG 29484 Query 66443 TGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACG 66502 ||||| || ||||| ||||| ||||| | ||| | | ||||| |||||||| || ||| Sbjct 29485 TGCCAAGGCTCCAGATAGATTGCGAATGCTCCCTTCCTCTTGCCACCACCTTGATCTACG 29544 Query 66503 TAGCGAGC---GACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCA 66559 ||||| || | |||||| | || |||| ||| || | ||| ||||| || |||| Sbjct 29545 TAGCGTGCTGTGTCATTGT---ACACTCGCAGCATTGGAATGAGACCGTTGGACGTGCCG 29601 Query 66560 TTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCA 66619 |||||||| |||| || || || || | ||| ||| | |||||||| || Sbjct 29602 TTGGTGCCCCTGATGTACGAGTTGGCAGCACGAATTTTGTGCACACTAAGACCAATTCCT 29661 Query 66620 CCGGCCGTCTTCGAGAT---GGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAATG 66676 ||||| |||| || || ||| |||| | |||| | |||| || || ||| Sbjct 29662 CCGGCGCTCTTAGAAATCAAGGC-GCACTGTTTAAGCGTGTC--GTATATCCCTTCTATG 29718 Query 66677 GAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCC 66736 ||| | | ||| | | |||| |||| ||| |||||| ||| || ||| | || Sbjct 29719 CTGTCTTCTTGCATGTTAACGAGGAAGCACGAAGAAAGTTGTGGTCGTGGCGTGCCAGCA 29778 Query 66737 GAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCG 66796 ||| || ||||| || || || || || | || |||| || ||| |||||||| Sbjct 29779 TTGAAAAGTGTGGGAGTGGCATGAGTGAATAATTGTTGAGAGATAAGATTATACGTCTCC 29838 Query 66797 ATGACAGC 66804 | ||||| Sbjct 29839 AATACAGC 29846 >seq96149 Length=6040 Score = 174 bits (192), Expect = 1e-38 Identities = 589/903 (65%), Gaps = 32/903 (4%) Strand=Plus/Plus Query 61026 TGAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGA 61085 ||| || || || | |||||||| || || || |||| |||||| || | Sbjct 855 TGAGCCTCTCCTGGAGGAGAATCCAAACCGCTTTGTGCTGTTTCCCATCCGTTACCAACG 914 Query 61086 TATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTT 61145 |||||| |||||||||||||| || || ||||||||||| | || |||||||| | Sbjct 915 CATTTGGGAGATGTACAAAAAGGCTGAGGCCTCCTTCTGGACAGCCGAAGAGGTCGACCT 974 Query 61146 G---TCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCGG-TGAACAACATTTCATTA 61201 | ||| | ||| || ||||| | | | | ||| || ||||||| Sbjct 975 GGCTTCCGATCACAACCATT----GGAGCTCTCTTACTTCTGATGAGAGGCACTTCATTA 1030 Query 61202 AACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAAC 61261 | ||||||||| |||||||| || || || || || || | |||||| || | | Sbjct 1031 AGTCTGTGTTGGCCTTCTTTGCTGCCTCTGATGGCATTGTGACTGAGAACTTGGCTGGGC 1090 Query 61262 GTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCA 61321 | ||| | ||| | || | | ||||| || || ||||||||||| |||||||||| Sbjct 1091 GCTTCATGACAGAGATTCAGATTCCTGAGGCTCGCTGCTTCTACGGCTTTCAGATTGCCA 1150 Query 61322 TGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGG 61381 | ||||| | |||||||| ||||| | | ||||| || ||| | | ||| | | Sbjct 1151 TTGAGAACATTCACTCGGAAATGTATTCCCTCTTGATCGACACCTACGTGAAGGACCACG 1210 Query 61382 CGGAACGTGAACGAT----TGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAA 61437 || ||| ||| | |||||||||||||| || | || | || ||| |||| Sbjct 1211 ----TCGAGAAGGATCATCTCTTCAATGCCATCGATACTGTGCCTTCTGTCAAGAAGAAA 1266 Query 61438 GCGGATTGGGCCTTCAATTGGAT---CACCAGTACAACGGCTACATTTGGTGAACGATTG 61494 || |||||||| |||| ||||| | ||| || | || || ||| ||||| Sbjct 1267 GCTGATTGGGCTCTCAAATGGATTGAAAAGAGTGGCACTGACACTTTCCCTGAGAGATTG 1326 Query 61495 CTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGG 61554 | ||||| || | || || || | || ||| |||| || | ||||||||| Sbjct 1327 GTTGCATTCGCCGCCGTGGAAGGCATCTTCTTCTCTGGAAGCTTCTGTTCCATCTTTTGG 1386 Query 61555 TTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGAT-ATCACGCGA 61613 | ||||| | || || ||||| || || |||||||||||||||||| | || | || Sbjct 1387 CTCAAGAAGAGGGGCCTCATGCCTGGCCTCTGCTTCAGCAATGAGTTGATCAGCA-GAGA 1445 Query 61614 CGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCC 61673 |||||| | ||||| || ||||| | | || | || || || || || || || Sbjct 1446 TGAGGGCCTTCATTGCGACTTTGCCTGTCTCCTGTACA---GCATGCTCGTCAACCGGCC 1502 Query 61674 GTCGGAGGAGCGTG-TGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTC 61732 || || | || | || | ||||| || || ||| |||||||| Sbjct 1503 TTCCACTGA-CATGCCCACACAAATCATCAAGGAGGCTGTGGAGATTGAAAAGGAATTTG 1561 Query 61733 TGACTGA--CGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTA 61790 | |||| ||||| || || ||||| || ||||| | || |||| || || Sbjct 1562 TCTCTGAGTCGCTT--CCTGTTGGCCTCATTGGAATGAACGCCGCGCTCATGTGTCAATA 1619 Query 61791 TATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGC-GGATCTATAATA 61849 ||||||||||| || ||| | || | |||| | | || ||| | | |||| || | Sbjct 1620 CATTGAATTTGTGGCAGACAGACTTCTCGTCGCTCTTGG-ATGCTCCAAGGTCTACAACA 1678 Query 61850 CGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCG 61909 || ||||| || || ||||| |||||||||||| | |||||||| ||||| || | Sbjct 1679 CGGCCAACCCCTTCCCTTGGATGGAAATGATTTCGCTGCAGGGCAAGACCAATTTCTTTG 1738 Query 61910 AGA 61912 ||| Sbjct 1739 AGA 1741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397091953070720