Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000193105.1_202011-03- 22] 1,521 sequences; 46,714,639 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq1352 86.0 3e-15 seq5 80.6 1e-13 >seq1352 Length=12447 Score = 86.0 bits (94), Expect = 3e-15 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 51 AACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCG 110 ||| || || ||| || |||||||| ||||| ||||||||||||||||||||||||||| Sbjct 7124 AACGTCTCCTAATCGCTGGTCGGCATCGTTTATGGTTAAGACTACGACGGTATCTGATCG 7183 Query 111 TCTTCGA 117 ||||||| Sbjct 7184 TCTTCGA 7190 >seq5 Length=86770 Score = 80.6 bits (88), Expect = 1e-13 Identities = 49/52 (94%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 66 CTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 || |||||||| ||||| |||||||||||||||||||||||||||||||||| Sbjct 80915 CTGGTCGGCATCGTTTATGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 80966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278396030190