Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000193105.1_202011-03- 22] 1,521 sequences; 46,714,639 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq1352 233 4e-59 seq723 102 1e-19 >seq1352 Length=12447 Score = 233 bits (258), Expect = 4e-59 Identities = 225/287 (78%), Gaps = 24/287 (8%) Strand=Plus/Minus Query 55 GTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCC----- 109 || || ||| |||| | ||||| |||||||||||||||||||||||||||| Sbjct 7477 GTCCCTGGGGCCCAGATCGTTTACCGTGAAAAAATTAGAGTGTTCAAAGCAGGCAGATCC 7418 Query 110 --TTTGCT-----CGAATACATTAGCATGGAATAATAGAATAGGACG-TGCGGTTCTATT 161 ||| || ||||||||||||||||| ||||| ||||||||| || | ||||| Sbjct 7417 AATTTTCTGCCACCGAATACATTAGCATGGGATAATGGAATAGGACCCTGTCCTCCTATT 7358 Query 162 TT--GTTGGTTT--------CTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTG 211 || |||||||| | ||||| ||||||||||||||||||||| ||||| Sbjct 7357 TTCAGTTGGTTTTGGCAGCGCGAGGACTAGGGTAATGATTAATAGGGATAGTTGGGGGCA 7298 Query 212 TCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAA 271 | | |||| |||||||||||||||||||||||||||||| |||| ||||| |||||||| Sbjct 7297 TTAATATTTAATTGTCAGAGGTGAAATTCTTGGATTTATGAAAGATTAACTTCTGCGAAA 7238 Query 272 GCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 || | |||||||||||||||||||||| |||||||||||||||| Sbjct 7237 GCATCTGCCAAGGATGTTTTCATTAATCA-AGAACGAAAGTTAGGGG 7192 >seq723 Length=538283 Score = 102 bits (112), Expect = 1e-19 Identities = 86/104 (83%), Gaps = 9/104 (9%) Strand=Plus/Plus Query 216 TATTCAATT-GTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274 |||| |||| |||||||||||||| ||||||||||| |||| |||| ||||||||| Sbjct 361110 TATTAAATTTGTCAGAGGTGAAATACTTGGATTTATGAAAGATGAACTTCTGCGAAAG-- 361167 Query 275 TTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 |||||||||| |||||||||| | ||||||||||||||| Sbjct 361168 -----CAAGGATGTTGTCATTAATCAAT-AACGAAAGTTAGGGG 361205 Score = 73.4 bits (80), Expect = 7e-11 Identities = 75/96 (78%), Gaps = 13/96 (14%) Strand=Plus/Plus Query 223 TTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAA 282 ||||||| || |||| ||||||||||| |||| |||| ||||||||| ||| Sbjct 394947 TTGTCAGGGG--AAATACTTGGATTTATGAAAGATGAACTTCTGCGAAAG-------CAA 394997 Query 283 GGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 ||||| |||||||||| | ||||||||||||||| Sbjct 394998 GGATG---TCATTAATCAAT-AACGAAAGTTAGGGG 395029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915186079808