Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000193105.1_202011-03- 22] 1,521 sequences; 46,714,639 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq1352 176 2e-41 >seq1352 Length=12447 Score = 176 bits (194), Expect = 2e-41 Identities = 239/338 (71%), Gaps = 38/338 (11%) Strand=Plus/Minus Query 382 GATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACAT 441 |||||||||| || || | | || ||||||||| ||||||||||||||||||||||| Sbjct 3927 GATGCTGGCGGAACGGCGCTGATCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACAC 3868 Query 442 CTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAG----------------T 485 | |||||||| ||||| |||||| | ||||| | |||||| | Sbjct 3867 GTGCGCGAGTGTCCGGGTGGCAAACCTGGGCGCGGAGTGAAAGCAGAGGGCGGCATTAGT 3808 Query 486 GAACG---GAGGTGGGAA----------------CCCGTGAGGGTGCACCATCGACCGAT 526 | || |||||||||| | |||| ||||||| || |||| Sbjct 3807 GGTCGCCTGAGGTGGGAAGGGGCATGCGTACTCGCGCGTGCTCCTGCACCACCGGCCGAC 3748 Query 527 CCTGATGT-CTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTG 585 | ||| | ||| || || |||||| ||||| || |||||||||||||||||| ||| Sbjct 3747 CTGGATTTTCTT--GAAGGGTTTGAGCCAGAGCGTATTTGTTGGGACCCGAAAGATTGTG 3690 Query 586 AACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTG 645 ||||||| ||| ||| |||||||||||||||||||||||||| || || | | ||| Sbjct 3689 AACTATGGGTGACCAGGACGAAGCCAGAGGAAACTCTGGTGGAGGTCCGAAGTGATACTG 3630 Query 646 GCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||||||| || || | ||| ||||||||||| Sbjct 3629 ACGTGCAAATCGTTCATCTGAGTTGCCTATAGGGGCGA 3592 Score = 154 bits (170), Expect = 6e-35 Identities = 133/163 (82%), Gaps = 4/163 (2%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| |||| ||| ||||||| | | || ||||||| Sbjct 4489 GAGTCGGGTTGTTTGGGAATGCAGCCCTAAGCGGGTGGTAAATCCCACCCAAGGCTAAAT 4430 Query 100 ATTG---GCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTG 156 |||| || |||||||||||||| ||||||| |||| ||||||||||||| |||||| Sbjct 4429 ATTGTCAGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGGACTTTG 4370 Query 157 GAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| | ||||| | |||||||||| ||||||||| Sbjct 4369 AAAAGAGAG-TCAAAAGTGCTTGAAATTGTTAGGAGGGAAGCG 4328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079967374550