Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000193105.1_202011-03- 22] 1,521 sequences; 46,714,639 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq1352 123 3e-26 >seq1352 Length=12447 Score = 123 bits (136), Expect = 3e-26 Identities = 154/209 (74%), Gaps = 24/209 (11%) Strand=Plus/Minus Query 5 CCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC-------TTTGCT--- 54 |||| | ||||| |||||||||||||| ||||||||||||| ||| || Sbjct 7466 CCAGATCGTTTACCGTGAAAAAATTAGAGTGTTCAAAGCAGGCAGATCCAATTTTCTGCC 7407 Query 55 --CGAATACATTACCATGGAATAATAGAATAGGACG-TGCGGTTCTATTTT--GTAGGTT 109 ||||||||||| ||||| ||||| ||||||||| || | ||||||| || |||| Sbjct 7406 ACCGAATACATTAGCATGGGATAATGGAATAGGACCCTGTCCTCCTATTTTCAGTTGGTT 7347 Query 110 TCTAGGACCGCCCG--------TAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCA 161 | | | | ||| | ||||||| |||| ||||||| ||||| | | |||| | Sbjct 7346 T-TGGCAGCGCGAGGACTAGGGTAATGATTAATAGGGATAGTTGGGGGCATTAATATTTA 7288 Query 162 ATTGTCAAAGGTGAAATTCTTGGATTTAT 190 ||||||| ||||||||||||||||||||| Sbjct 7287 ATTGTCAGAGGTGAAATTCTTGGATTTAT 7259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511992455840