Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000193105.1_202011-03- 22] 1,521 sequences; 46,714,639 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq1352 462 7e-128 seq414 138 3e-30 >seq1352 Length=12447 Score = 462 bits (512), Expect = 7e-128 Identities = 450/587 (77%), Gaps = 83/587 (14%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAA-GAGC-CCTGTATCAGTATTTATTGTCACTAC 58 |||||||||||||||||||||| | | |||| ||||||| |||||||||||||||| Sbjct 7806 GTACTCATTCCAATTACAAGACTCTTATCGAGCGCCTGTATTGTTATTTATTGTCACTAC 7865 Query 59 CTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCG 118 |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 7866 CTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGAAGTGGTAGCCA 7925 Query 119 TTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGG 178 ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 7926 TTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTTACCCGTTACGACCATGG 7985 Query 179 TAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCG- 237 |||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct 7986 TAGGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAATCGTCGCCGT 8045 Query 238 --GCTCAAGG-------CCATGCGATTCGTTA-AGTTATTATGAATCACCA--------- 278 | ||||| ||||||| || | ||||| |||||||||||| Sbjct 8046 CCCCACAAGGAGGACATGAATGCGATCCGAAAGAGTTACTATGAATCACCAGGAGTGTTT 8105 Query 279 ---AGGAGCC----CCGA---AGGGCGTTGGTTTTTTATCTAATAAATACACCCCT---- 324 ||| ||| | || | || |||||||| | |||||||||||| |||| Sbjct 8106 GGCAGGGGCCATTGCTGACCCCTGCCGCTGGTTTTTAACCTAATAAATACATCCCTCTGC 8165 Query 325 ---TCCGAAG------------------------------TCGGGGTTTTTAGCATGTAT 351 | ||| | ||||| || |||||||| Sbjct 8166 GCATGCGAGGACAGGGCCGTGAAGCCCTGCCCCCCCGCGCTCGGGACCTTGCGCATGTAT 8225 Query 352 TAGCTCTAGAATTACCACGGTTATCCATGTAG-------------TAAGGTACTATCAAA 398 ||||||||||||||||||||||||||| |||| ||| || |||||| Sbjct 8226 TAGCTCTAGAATTACCACGGTTATCCAAGTAGGTAAAAAAAGACAAAAGAGACCATCAAA 8285 Query 399 TAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGA-TTGCTTATACTT 457 ||||| ||||||||||||||||||||| |||||| || | ||||| | |||||||||| Sbjct 8286 TAAACTATAACTGATTTAATGAGCCATCCGCAGTCTCGCCGTATAAACAAGCTTATACTT 8345 Query 458 AGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8346 AGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 8392 >seq414 Length=771140 Score = 138 bits (152), Expect = 3e-30 Identities = 90/98 (92%), Gaps = 1/98 (1%) Strand=Plus/Plus Query 408 ACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCA 466 |||||||||||||||||| |||||| || | ||||| | ||||||||||||||||||| Sbjct 186588 ACTGATTTAATGAGCCATCCGCAGTCTCGCCGTATAAACAAGCTTATACTTAGACATGCA 186647 Query 467 TGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||||||||||| Sbjct 186648 TGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 186685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510377026816