Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000193105.1_202011-03- 22] 1,521 sequences; 46,714,639 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq42 273 2e-68 seq447 205 7e-48 seq108 96.9 3e-15 >seq42 Length=72740 Score = 273 bits (302), Expect = 2e-68 Identities = 923/1423 (65%), Gaps = 36/1423 (3%) Strand=Plus/Plus Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136 |||||| |||||||||||||| || || || | | ||| | ||| |||||||||||||| Sbjct 18722 ATCGACGGTGAACTGGATCGCGTTGGCGGCGGGCCGGGTGCGAAGGTAGTACATGCCGGT 18781 Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTC 65196 ||||||||| ||||| || ||||| |||||||| | | || || | ||||| Sbjct 18782 CTTGAGGCCCTTGCGCCAGGCGTAGAAGTGCATCGAGGTGAGCTTAGCGAACGAGGGCTC 18841 Query 65197 GGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCA-CGATCTGCAGCCA 65255 | ||| | | || | |||||| ||||| ||||||| | | | | ||||| || |||| Sbjct 18842 GCCCATGTAGACGTTGAGCGACTGGCTCTGGTCGATGT-AGGCCGAGCGATCGGCGGCCA 18900 Query 65256 TGTCAATGAT-ACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGT-ACCTC 65313 |||| ||||| ||| || || | |||||| ||||||||||||| || | | | || Sbjct 18901 TGTCGATGATGACG-CGCTGCGGGAGCTCCCACACGGTCTTGTACA-GCTTCTTGATGTC 18958 Query 65314 AATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGC-- 65371 || |||||||| ||| ||| || || | || |||| | | | | || | Sbjct 18959 GTCGGGGATCTCCTCGATGCGCTGTACCGAGC--CGTTGTGCGA-GACGAGCTTGTTCTT 19015 Query 65372 -ATCGACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGAC 65430 | || ||||| | || | || | | | | ||| |||| ||| Sbjct 19016 GAGCGCAGGCGACCAGAGGCCGCGCTGCTGCAGCTCGCGCAGAAGGTGCTCGTTGACGAC 19075 Query 65431 TTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGA 65490 ||| ||||||| || | || ||| |||||||||| |||| ||| |||||| | Sbjct 19076 GGTGAAGTCGCCGGCGAGGATGCGGCGGGTGTAGATGTTGGTCGTGTAGGGCTCAAAGCA 19135 Query 65491 TTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGA 65550 || ||||||| || || || | || || || || |||||||| || || | | || Sbjct 19136 CTCGTTGTTGCCCAGGATCTGCGAGGTCGAGGCCGTGGGCATGGGCGCCACGAGGAGCGA 19195 Query 65551 GTTTCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACATCGGTTT 65610 ||| |||| |||| | | |||||| || | | |||||| |||| | || Sbjct 19196 GTTGCGCAGACCGTGCTGGGCGATGTTGGCGCGGAGCGTGGCCCAGTCCCAC--CTGT-- 19251 Query 65611 ATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACC 65670 || || || | ||| ||| | || | || || | || | || || || || Sbjct 19252 -CCGACGGCA-CGACGCCCCAGAGGTCGGGCTGGAGCTTGCCCTTGGACGCGGGCGAGCC 19309 Query 65671 GAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGC 65730 | | | | ||| ||||| ||| || || | || | || ||||| Sbjct 19310 CTCGTAGGTCTGGTAGGTGCCCTCAACCTGCGCGAGCTCGTTCGAGGCGACCAGGGCGGC 19369 Query 65731 AAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGG 65790 | || ||||||||||| ||| || || || || || ||||| |||||||| |||| Sbjct 19370 GTAGTAGATGGTCTCGAAGATGGCGCGGTTGAGCTCGCGGGCCTCGTCGCTCTCCCACGG 19429 Query 65791 CATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATG 65850 | ||| | | || ||||||||| || || ||||| || |||||||| | || Sbjct 19430 GTGGCGCATGATCATGAAGACGTCGGCCAGGCCCTGCACTCCGATGCCGATGGGCCTGTG 19489 Query 65851 ACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATT 65910 |||| || || | ||||| || || |||||||| ||||| ||||| | || Sbjct 19490 GCGCATGTTCGAGTTGCGGGCCTCGGGCACGGGGTAGTAGTTGATGTCGATCACCTTGTT 19549 Query 65911 CAAATTGCGTGTCACCACATGCACGATACGTCGCAATTGTTCGAAATCAAAATGTTTAGG 65970 | || || ||||| | |||| |||||| || || | || || Sbjct 19550 GAGGTTCTTGGTGACCACCTTCACG--ACGTCG----TG--------CAGCTTCTTGTGG 19595 Query 65971 ACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGAC 66030 ||| | |||| | |||||||| || || || || || |||||||| || Sbjct 19596 TCGAAC----TCGCCGTTGGTGATGAACTTGGGCAGCGCGAGCGAGGCCAGGTTGCACAC 19651 Query 66031 AGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTAT 66090 || | |||||| || | || |||| ||| | || |||||||| || | | || Sbjct 19652 GGCCACCTCGTCGGGCGACGTGTACTGGACGACCTCCGTGCACAGGTTCGACGACTGGAT 19711 Query 66091 GGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGG 66150 |||||| | | ||| || || ||||| ||||| || |||||||||| |||||| || Sbjct 19712 GGTGCCGAGGTGCTGCTGGTTGGACTTGCCGTTGCAGGCGTCCTTGTACAGCATGTAGGG 19771 Query 66151 AGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGT 66210 ||||||||||| | || ||||||| ||| ||| ||| || | | ||||| ||| Sbjct 19772 CGTGCCGGTCTCGATCTGCGACTCAAGGATAGCGAACCACAGTTCCTGGGCCTTGACCAC 19831 Query 66211 ACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCA 66270 || ||| | || | | ||||| | ||||| | ||||| | ||||| Sbjct 19832 GCGGCGCGCGCGGCCCTCCTGCTCGTAGCGCTCGTACTTCTCCTCGAACTCCTTGCCCCA 19891 Query 66271 TACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTC 66330 || |||| | || || || || || | |||||||| || || || || Sbjct 19892 CGAGTCAAACAGGCCGGGGGCCTCGTTGGGGCAAAAGAGCGACCAGTCGCCGCCCGTCTC 19951 Query 66331 TACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTG 66390 || || ||| || || || || ||||| ||| |||||||||||||||| || || | Sbjct 19952 CACGCGCTTCATGAAGAGGTCGGGAATCCACAGGCCGTAGAAGAGATCGCGGGCGCGGTT 20011 Query 66391 CTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGG 66450 |||||| ||||||| || || || ||||||||| ||||||||||| || ||||| || Sbjct 20012 CTCCTCCTTGCCGTGGTTCTTCTTCAGGTCGAGGAAGTCAAAGATGTCCGCGTGCCAGGG 20071 Query 66451 TTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCT 66493 || |||||||||||||| | ||| | || || || || ||| Sbjct 20072 CTCGAGGTAGATGGCGAAAGCACCCTTGCGCTTACCACCTCCT 20114 >seq447 Length=587387 Score = 205 bits (226), Expect = 7e-48 Identities = 406/593 (68%), Gaps = 15/593 (3%) Strand=Plus/Plus Query 61054 CGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAA 61113 || ||||| ||||||||||| || || || ||| |||||||| ||||| || Sbjct 396840 CGATTCGTGCTGTTCCCCATCCGCTACCAGCGCATCTGGGAGATGTACAAGAAGGCCGAG 396899 Query 61114 GCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAG-CG 61172 || ||||||||||||| ||||| |||||| || | |||||||| ||||||| || Sbjct 396900 GCCTCCTTCTGGACGGCCGAGGAAGTCGATCTGAGCTCCGACATGAAGCACTGGGAATCG 396959 Query 61173 TTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGA 61232 | | | | || || || ||||| || || || |||| ||||| ||||| || Sbjct 396960 CTCAGCAA-CGACGAGAGGCACTTCATCAAGCACGTCCTGGCCTTCTTCGCCGCCAGCGA 397018 Query 61233 CGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGC 61292 ||| ||||| |||||| | | || ||| | |||||||||| ||| | ||||| Sbjct 397019 CGGCATCGTGGCCGAGAATCTCGCCGGCCGCTTCATGAAGGAGGTGCAGGTGCCCGAGGC 397078 Query 61293 GCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGT 61352 ||| || |||||||||||||| || ||||| ||||| ||||||| ||||||||| | Sbjct 397079 GCGCTGCTTCTACGGCTTCCAAATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCT 397138 Query 61353 TCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGA----TTGTTCAATGCCA 61408 |||||||| || ||| ||| ||| | | || ||| || | ||| |||| Sbjct 397139 CCTCATCGACACCTACGTCAAGGA----CCCCATCGAGAAGGACCACCTCTTCCGCGCCA 397194 Query 61409 TCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATC-ACCAGT 61467 ||||||| | || |||| ||| ||| || ||||||||| | || |||||| || || Sbjct 397195 TCGAGACCGTGCCCTCGGTCAAGAAGAAGGCCGATTGGGCCATGAAGTGGATCAACAAGG 397254 Query 61468 ACAACG--GCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTT 61525 | | | || || | || || | | | ||| || | |||||||| | || | Sbjct 397255 AGGGTGTCGAGACCTTCGCCGAGCGCCTCATTGGATTCGCCGCCGTCGAGGGCATCTTCT 397314 Query 61526 TCAGTGG-ATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTG 61584 || || | | | || | | ||||| ||| | ||||| || || || |||||||| || Sbjct 397315 TCTCCGGCAGCTTCTG-CTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTC 397373 Query 61585 ACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC 61637 ||||||| || ||| |||| ||||| |||||| | || || || || || Sbjct 397374 GCCTTCAGTAACGAGATGATCAGCCGCGATGAGGGCCTCCACTGCGACTTCGC 397426 >seq108 Length=164275 Score = 96.9 bits (106), Expect = 3e-15 Identities = 144/200 (72%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 61054 CGTTTCGTATTGTTCCCCATCGAGTATG--AGGATATTTGGCGCATGTACAAAAAGGCGG 61111 || ||||| ||||||||||| |||| | ||||| ||| |||||||| ||||| | Sbjct 11557 CGGTTCGTGCTGTTCCCCATCCAGTACGCCCGGATA--TGGGAGATGTACAAGAAGGCCG 11614 Query 61112 AAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGC 61171 | || || |||||||| | ||||||||||| || | |||||||| ||||| | Sbjct 11615 AGGCCTCGTTCTGGACCGCCGAGGAGGTCGACCTGAGCTCCGACATGAAGCACTGGAACA 11674 Query 61172 G-TTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCG 61230 | | | || ||| ||| || || ||||| ||||| | |||| ||||| || || Sbjct 11675 GCCTCAGCG-GCGATGAGCAGCACTTCATCAAACACATCCTGGCCTTCTTCGCGGCCAGC 11733 Query 61231 GACGGTATCGTCAATGAGAA 61250 ||||| |||||||| ||||| Sbjct 11734 GACGGCATCGTCAACGAGAA 11753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397560630207440