Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000826485.1_202015-01- 07] 221,748 sequences; 115,049,889 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq142241 143 4e-32 seq3494 140 5e-31 seq88272 122 1e-25 seq122758 113 7e-23 seq97933 107 3e-21 seq107001 104 4e-20 seq165576 89.7 8e-16 seq218478 78.8 1e-12 seq2377 77.0 5e-12 seq147389 75.2 2e-11 >seq142241 Length=127 Score = 143 bits (158), Expect = 4e-32 Identities = 98/108 (91%), Gaps = 2/108 (2%) Strand=Plus/Minus Query 34 TGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGCAATGATCTATC 93 ||||||||||||||||||||||||| |||||||||||| ||| |||| |||||||||||| Sbjct 124 TGATGACTCGCGCTTACTAGGAATT-CCTCGTTGAAGATCAATAATTACAATGATCTATC 66 Query 94 CCCATCACGATGAAATTT-CAAAGATTACCCGGACCTGTCGGCCAAGG 140 | || |||||| |||||| |||||||||||||||||| |||||| ||| Sbjct 65 CACAGCACGATTAAATTTGCAAAGATTACCCGGACCTATCGGCCCAGG 18 >seq3494 Length=132 Score = 140 bits (154), Expect = 5e-31 Identities = 85/89 (96%), Gaps = 1/89 (1%) Strand=Plus/Plus Query 146 GACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 205 ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 28 GACTCGTTGGATTAATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 87 Query 206 ACCTGTTATTGCCTCAAACTTCCG-TGGC 233 |||||||||||||||||||||||| |||| Sbjct 88 ACCTGTTATTGCCTCAAACTTCCGCTGGC 116 >seq88272 Length=84 Score = 122 bits (134), Expect = 1e-25 Identities = 80/86 (93%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 9 GGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGA 68 |||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||| Sbjct 1 GGCAGGGACGTAATCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-CCTCGTTGA 58 Query 69 AGACCAACAATTGCAATGATCTATCC 94 ||| ||| |||| ||||||||||||| Sbjct 59 AGATCAATAATTACAATGATCTATCC 84 >seq122758 Length=99 Score = 113 bits (124), Expect = 7e-23 Identities = 76/84 (90%), Gaps = 1/84 (1%) Strand=Plus/Minus Query 58 TTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTT-CAAAG 116 |||||||||||||| ||| |||| |||||||||||||||| |||||| |||||| ||||| Sbjct 99 TTCCTCGTTGAAGATCAATAATTACAATGATCTATCCCCAGCACGATTAAATTTGCAAAG 40 Query 117 ATTACCCGGACCTGTCGGCCAAGG 140 ||||||||||||| |||||| ||| Sbjct 39 ATTACCCGGACCTATCGGCCCAGG 16 >seq97933 Length=105 Score = 107 bits (118), Expect = 3e-21 Identities = 75/84 (89%), Gaps = 1/84 (1%) Strand=Plus/Minus Query 58 TTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTT-CAAAG 116 |||||||||||||| ||| |||| |||||||||||||||| |||||| |||||| ||||| Sbjct 105 TTCCTCGTTGAAGATCAATAATTACAATGATCTATCCCCAGCACGATTAAATTTGCAAAG 46 Query 117 ATTACCCGGACCTGTCGGCCAAGG 140 ||| ||||||||| |||||| ||| Sbjct 45 ATTCCCCGGACCTATCGGCCCAGG 22 >seq107001 Length=127 Score = 104 bits (114), Expect = 4e-20 Identities = 67/71 (94%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||| ||| Sbjct 57 GTACAAATGGCAGGGACGTAATCAACGCGAGC-TGATGACTCGCGCTTACTAGGAA-TTC 114 Query 61 CTCGTTGAAGA 71 ||||||||||| Sbjct 115 CTCGTTGAAGA 125 >seq165576 Length=127 Score = 89.7 bits (98), Expect = 8e-16 Identities = 54/56 (96%), Gaps = 1/56 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAA 56 |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 73 GTACAAAGGGCAGGGACGTAATCAACGCGAGC-TGATGACTCGCGCTTACTAGGAA 127 >seq218478 Length=47695 Score = 78.8 bits (86), Expect = 1e-12 Identities = 48/50 (96%), Gaps = 1/50 (2%) Strand=Plus/Plus Query 185 GAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCG-TGGC 233 ||||||||||||||||| ||||||||||||||||||||||||||| |||| Sbjct 6774 GAACATCTAAGGGCATCCCAGACCTGTTATTGCCTCAAACTTCCGCTGGC 6823 >seq2377 Length=127 Score = 77.0 bits (84), Expect = 5e-12 Identities = 46/47 (98%), Gaps = 1/47 (2%) Strand=Plus/Plus Query 188 CATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCG-TGGC 233 |||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1 CATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGCTGGC 47 >seq147389 Length=127 Score = 75.2 bits (82), Expect = 2e-11 Identities = 45/46 (98%), Gaps = 1/46 (2%) Strand=Plus/Minus Query 189 ATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCG-TGGC 233 ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 127 ATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGCTGGC 82 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 750384565820