Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000826485.1_202015-01- 07] 221,748 sequences; 115,049,889 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq209846 170 3e-40 seq44905 78.8 2e-12 seq112410 75.2 2e-11 seq94449 73.4 7e-11 >seq209846 Length=542 Score = 170 bits (188), Expect = 3e-40 Identities = 120/136 (88%), Gaps = 1/136 (1%) Strand=Plus/Plus Query 183 GTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTT 242 ||||||||||||||||||||| ||||| | | |||| |||||||||||||||||||||| Sbjct 329 GTAATGATTAATAGGGATAGTTGGGGGCATTAATATTTAATTGTCAGAGGTGAAATTCTT 388 Query 243 GGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGT 302 |||||||| |||| ||||| |||||||||| | |||||||||||||||||||||| Sbjct 389 GGATTTATGAAAGATTAACTTCTGCGAAAGCATCTGCCAAGGATGTTTTCATTAATCA-A 447 Query 303 GAACGAAAGTTAGGGG 318 |||||||||||||||| Sbjct 448 GAACGAAAGTTAGGGG 463 >seq44905 Length=127 Score = 78.8 bits (86), Expect = 2e-12 Identities = 91/121 (75%), Gaps = 15/121 (12%) Strand=Plus/Minus Query 66 CCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC-------CTTTGCT--- 115 |||| | ||||| |||||||||||||||||||||||||||| ||| || Sbjct 126 CCAGATCGTTTACCGTGAAAAAATTAGAGTGTTCAAAGCAGGCAGATCCAATTTTCTGCC 67 Query 116 --CGAATACATTAGCATGGAATAATAGAATAGGA-CGTGCGGTTCTATTTT--GTTGGTT 170 |||||||||||||||| ||||| |||||||| | || | ||||||| ||||||| Sbjct 66 ACAGAATACATTAGCATGGGATAATGGAATAGGACCCTGTCCTCCTATTTTCAGTTGGTT 7 Query 171 T 171 | Sbjct 6 T 6 >seq112410 Length=94 Score = 75.2 bits (82), Expect = 2e-11 Identities = 72/93 (77%), Gaps = 12/93 (13%) Strand=Plus/Plus Query 66 CCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC-------CTTTGCT--- 115 |||| | ||||| |||||||||||||||||||||||||||| ||| || Sbjct 2 CCAGATCGTTTACCGTGAAAAAATTAGAGTGTTCAAAGCAGGCAGATCCAATTTTCTGCC 61 Query 116 --CGAATACATTAGCATGGAATAATAGAATAGG 146 ||||||||||||||||| ||||| ||||||| Sbjct 62 ACCGAATACATTAGCATGGGATAATGGAATAGG 94 >seq94449 Length=127 Score = 73.4 bits (80), Expect = 7e-11 Identities = 78/104 (75%), Gaps = 12/104 (12%) Strand=Plus/Minus Query 55 GTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC------ 108 || || ||| |||| | ||||| |||||||||||||| ||||||||||||| Sbjct 104 GTCCCTGGGGCCCAGATCGTTTACCGTGAAAAAATTAGAGGGTTCAAAGCAGGCAGATCC 45 Query 109 -CTTTGCT-----CGAATACATTAGCATGGAATAATAGAATAGG 146 ||| || ||||||||||||||||| ||||| ||||||| Sbjct 44 AATTTTCTGCCACCGAATACATTAGCATGGGATAATGGAATAGG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 913170562304