Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000826485.1_202015-01- 07] 221,748 sequences; 115,049,889 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq43260 120 1e-24 seq217339 116 2e-23 seq135434 116 2e-23 seq55031 111 7e-22 seq11234 107 8e-21 seq105367 105 3e-20 seq97983 102 3e-19 seq149650 100 1e-18 seq163195 95.1 5e-17 seq167858 89.7 2e-15 seq35239 87.8 7e-15 seq202365 86.0 3e-14 seq120550 82.4 3e-13 seq143709 80.6 1e-12 seq80871 80.6 1e-12 seq120124 75.2 5e-11 >seq43260 Length=127 Score = 120 bits (132), Expect = 1e-24 Identities = 99/121 (82%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 540 GATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAAT 599 || || |||||| ||||| || |||||||||||||||||| |||||||||| ||| Sbjct 123 GAAGGGTTTGAGCCAGAGCGTATTTGTTGGGACCCGAAAGATTGTGAACTATGGGTGACA 64 Query 600 AGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGAT 659 ||| |||||||||||||||||||||||||| || || | | ||| ||||||||||| | Sbjct 63 AGGACGAAGCCAGAGGAAACTCTGGTGGAGGTCCGAAGTGATACTGACGTGCAAATCGTT 4 Query 660 C 660 | Sbjct 3 C 3 >seq217339 Length=5895 Score = 116 bits (128), Expect = 2e-23 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 540 GATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAAT 599 || || |||||| |||||||| |||||||||| ||||||| |||||||||| ||| Sbjct 3729 GAAGGGTTTGAGCCAGAGCATATTTGTTGGGACCTGAAAGATTGTGAACTATGGGTGACC 3788 Query 600 AGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGAT 659 ||| |||||||||||||||||||||||||| | || | | ||| ||||||||| | Sbjct 3789 AGGACGAAGCCAGAGGAAACTCTGGTGGAGGTCCAAAGTGATACTGATGTGCAAATCATT 3848 Query 660 CGTCAAATTTGGGTATAGGGGCGA 683 | || | ||| |||||||| || Sbjct 3849 CATCTGAGTTGCCTATAGGGGTGA 3872 >seq135434 Length=127 Score = 116 bits (128), Expect = 2e-23 Identities = 103/127 (81%), Gaps = 4/127 (3%) Strand=Plus/Plus Query 76 GGTAAATTTCTTCTAAAGCTAAATATTG---GCCAGAGACCGATAGCGCACAAGTAGAGT 132 ||||||| | | || ||||||||||| || |||||||||||||| ||||||| || Sbjct 2 GGTAAATCCCACCCAAGGCTAAATATTGTCAGCGAGAGACCGATAGCGAACAAGTACCGT 61 Query 133 GATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAG 192 ||| ||||||||||||| |||||| |||||||| | ||||| | |||||||||| || Sbjct 62 GATGGAAAGATGAAAAGGACTTTGAAAAGAGAG-TCAAAAGTGCTTGAAATTGTTAGGAG 120 Query 193 GGAAGCG 199 ||||||| Sbjct 121 GGAAGCG 127 >seq55031 Length=127 Score = 111 bits (122), Expect = 7e-22 Identities = 97/119 (82%), Gaps = 4/119 (3%) Strand=Plus/Minus Query 72 GGGAGGTAAATTTCTTCTAAAGCTAAATATTG---GCCAGAGACCGATAGCGCACAAGTA 128 ||| ||||||| | | || ||||||||||| || |||||||||||||| ||||||| Sbjct 125 GGGTGGTAAATCCCACCCAAGGCTAAATATTGTCAGCGAGAGACCGATAGCGAACAAGTA 66 Query 129 GAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTT 187 ||||| ||||||||||||| |||||| |||||||| | ||||| | |||||||||| Sbjct 65 CAGTGAGGGAAAGATGAAAAGGACTTTGAAAAGAGAG-TCAAAAGTGCTTGAAATTGTT 8 >seq11234 Length=127 Score = 107 bits (118), Expect = 8e-21 Identities = 92/114 (81%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 570 GACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAG 629 |||||||||||| |||||||||| ||| ||| ||||||||||||||||||||||||| Sbjct 127 GACCCGAAAGATTGTGAACTATGGGTGACCAGGACGAAGCCAGAGGAAACTCTGGTGGAG 68 Query 630 GCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | | || | | ||| ||||||||||| || || | ||| ||||||||||| Sbjct 67 GTCAGAAGTGATACTGACGTGCAAATCGTTCATCTGAGTTGCCTATAGGGGCGA 14 >seq105367 Length=127 Score = 105 bits (116), Expect = 3e-20 Identities = 91/112 (81%), Gaps = 3/112 (3%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| |||| ||| ||||||| | || ||||||| Sbjct 112 GAGTCGGGTTGTTTGGGAATGCAGCCCTAAGCGGGTGGTAAATCCCACACAAGGCTAAAT 53 Query 100 ATTG---GCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAA 148 |||| || |||||||||||||| ||||||| |||| |||||||||||| Sbjct 52 ATTGTCAGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAA 1 >seq97983 Length=97 Score = 102 bits (112), Expect = 3e-19 Identities = 77/91 (85%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 540 GATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAAT 599 || || |||||| ||||| || |||||||||||||||||| |||||||||| ||| Sbjct 5 GAAGGGTTTGAGCCAGAGCGTATTTGTTGGGACCCGAAAGATTGTGAACTATGGGTGACC 64 Query 600 AGGGTGAAGCCAGAGGAAACTCTGGTGGAGG 630 ||| |||||||||||||||||||||||||| Sbjct 65 AGGACGAAGCCAGAGGAAACTCTGGTGGAGG 95 >seq149650 Length=105 Score = 100 bits (110), Expect = 1e-18 Identities = 84/101 (83%), Gaps = 4/101 (4%) Strand=Plus/Minus Query 90 AAAGCTAAATATTG---GCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAA 146 || ||||||||||| || |||||||||||||| ||||||| |||| |||||||||| Sbjct 104 AAGGCTAAATATTGTCAGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAA 45 Query 147 AAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTT 187 ||| |||||| |||||||| | ||||| | |||||||||| Sbjct 44 AAGGACTTTGAAAAGAGAG-TCAAAAGTGCTTGAAATTGTT 5 >seq163195 Length=127 Score = 95.1 bits (104), Expect = 5e-17 Identities = 80/98 (82%), Gaps = 3/98 (3%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| |||| ||| ||||||| | | || ||||||| Sbjct 29 GAGTCGGGTTGTTTGGGAATGCAGCCCTAAGCGGGGGGTAAATCCCACCCAAGGCTAAAT 88 Query 100 ATTG---GCCAGAGACCGATAGCGCACAAGTAGAGTGA 134 |||| || |||||||||||||| ||||||| |||| Sbjct 89 ATTGTCAGCGAGAGACCGATAGCGAACAAGTACCGTGA 126 >seq167858 Length=127 Score = 89.7 bits (98), Expect = 2e-15 Identities = 79/98 (81%), Gaps = 3/98 (3%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| |||| ||| |||||| | | || ||||||| Sbjct 28 GAGTCGGGTTGTTTGGGAATGCAGCCCTAAGCGGGTTGTAAATCCCACCCAAGGCTAAAT 87 Query 100 ATTG---GCCAGAGACCGATAGCGCACAAGTAGAGTGA 134 |||| || |||||||||||||| ||||||| |||| Sbjct 88 ATTGTCAGCGAGAGACCGATAGCGAACAAGTACCGTGA 125 >seq35239 Length=127 Score = 87.8 bits (96), Expect = 7e-15 Identities = 75/92 (82%), Gaps = 3/92 (3%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| |||| || ||||||| | | || ||||||| Sbjct 32 GAGTCGGGTTGTTTGGGAATGCAGCCCTAAGCTGGTGGTAAATCCCACCCAAGGCTAAAT 91 Query 100 ATTG---GCCAGAGACCGATAGCGCACAAGTA 128 |||| || |||||||||||||| ||||||| Sbjct 92 ATTGTCAGCGAGAGACCGATAGCGAACAAGTA 123 >seq202365 Length=5003 Score = 86.0 bits (94), Expect = 3e-14 Identities = 74/91 (81%), Gaps = 3/91 (3%) Strand=Plus/Minus Query 47 GTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTG--- 103 |||||||||||||||||| |||| ||| ||||||| | | || ||||||||||| Sbjct 2400 GTTGTTTGGGAATGCAGCCCTAAGCGGGTGGTAAATCCCACCCAAGGCTAAATATTGTCA 2341 Query 104 GCCAGAGACCGATAGCGCACAAGTAGAGTGA 134 || |||||||||||||| ||||||| |||| Sbjct 2340 GCGAGAGACCGATAGCGAACAAGTACCGTGA 2310 >seq120550 Length=127 Score = 82.4 bits (90), Expect = 3e-13 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAA 464 || ||||||||| ||||||||||||||||||||||| | |||||||| |||| ||| Sbjct 13 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAACACGTGCGCGAGTGTCCTGGTGGCAA 72 Query 465 ACCCGTGCGCGTAATGAAAG 484 ||| | ||||| | |||||| Sbjct 73 ACCTGGGCGCGGAGTGAAAG 92 >seq143709 Length=127 Score = 80.6 bits (88), Expect = 1e-12 Identities = 73/92 (79%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 382 GATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACAT 441 |||||||||| || || | | || || |||||| ||||||||||||||||||||||| Sbjct 92 GATGCTGGCGGAACGGCGCTGATCGACCAGTCTTGAAACACGGACCAAGGAGTCTAACAC 33 Query 442 CTATGCGAGTGTTTGGGTGTCAAACCCGTGCG 473 | |||||||| ||||| |||||| | ||| Sbjct 32 GTGCGCGAGTGTCCGGGTGGCAAACCTGGGCG 1 >seq80871 Length=97 Score = 80.6 bits (88), Expect = 1e-12 Identities = 65/79 (82%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 605 GAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCA 664 |||||||||||||||||||||||||| || || | | ||| ||||||||||| || || Sbjct 92 GAAGCCAGAGGAAACTCTGGTGGAGGTCCGAAGTGATACTGACGTGCAAATCGTTCATCT 33 Query 665 AATTTGGGTATAGGGGCGA 683 | ||| ||||||||||| Sbjct 32 GAGTTGCCTATAGGGGCGA 14 >seq120124 Length=81 Score = 75.2 bits (82), Expect = 5e-11 Identities = 58/69 (84%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAA 464 || ||||||||| ||||||||||||||||||||||| | |||||||| ||||| ||| Sbjct 69 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAACACGTGCGCGAGTGTCCGGGTGGCAA 10 Query 465 ACCCGTGCG 473 ||| | ||| Sbjct 9 ACCTGGGCG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2075243505400