Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000826485.1_202015-01- 07] 221,748 sequences; 115,049,889 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq154384 95.1 2e-17 seq18024 95.1 2e-17 seq132181 89.7 7e-16 seq100356 78.8 1e-12 seq65329 75.2 2e-11 >seq154384 Length=127 Score = 95.1 bits (104), Expect = 2e-17 Identities = 78/94 (83%), Gaps = 1/94 (1%) Strand=Plus/Plus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 ||| || ||||||||||| ||||| || ||||||||| |||| ||| || | ||| Sbjct 13 CTTTCAGCACCGGGCAGGTGTCAGACCCTATACATCGTTTTACAA-CTTAGCGGAGTCCT 71 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCT 100 |||||||||||||||||||||| ||||||||||| Sbjct 72 GTGTTTTTAGTAAACAGTCGCTACCCTCTATTCT 105 >seq18024 Length=127 Score = 95.1 bits (104), Expect = 2e-17 Identities = 77/92 (84%), Gaps = 1/92 (1%) Strand=Plus/Minus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 ||| || ||||||||||| ||||| || ||||||||| |||| ||| ||| | ||| Sbjct 91 CTTTCAGCACCGGGCAGGTGTCAGACCATATACATCGTTTTACAA-CTTAGCAGAGTCCT 33 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATT 98 |||||||||||||||||||||| ||||||||| Sbjct 32 GTGTTTTTAGTAAACAGTCGCTACCCTCTATT 1 >seq132181 Length=127 Score = 89.7 bits (98), Expect = 7e-16 Identities = 75/91 (82%), Gaps = 1/91 (1%) Strand=Plus/Minus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 ||| || ||||||||||| ||||| | ||||||||| |||| ||| ||| | ||| Sbjct 90 CTTTCAGCACCGGGCAGGTGTCAGACACTATACATCGTTTTACAA-CTTAGCAGAGTCCT 32 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTAT 97 |||||||||||||||||||||| |||||||| Sbjct 31 GTGTTTTTAGTAAACAGTCGCTACCCTCTAT 1 >seq100356 Length=127 Score = 78.8 bits (86), Expect = 1e-12 Identities = 63/75 (84%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 26 GTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTGTGTTTTTAGTAAACAGTC 85 ||||| || ||||||||| |||| ||| ||| | |||||||||||||||||||||| Sbjct 126 GTCAGACCCTATACATCGTTTTACAA-CTTAGCAGAGTCCTGTGTTTTTAGTAAACAGTC 68 Query 86 GCTTCCCTCTATTCT 100 ||| ||||||||||| Sbjct 67 GCTGCCCTCTATTCT 53 >seq65329 Length=127 Score = 75.2 bits (82), Expect = 2e-11 Identities = 66/81 (81%), Gaps = 1/81 (1%) Strand=Plus/Plus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 ||| || ||||||||| | ||||| || ||||||||| |||| ||| ||| | ||| Sbjct 48 CTTTCAGCACCGGGCATGTGTCAGACCCTATACATCGTTTTACAA-CTTAGCAGAGTCCT 106 Query 67 GTGTTTTTAGTAAACAGTCGC 87 ||||||||||||||||||||| Sbjct 107 GTGTTTTTAGTAAACAGTCGC 127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 692908301204