Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000826485.1_202015-01- 07] 221,748 sequences; 115,049,889 total letters Query= AAMG01000599.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq154384 73.4 4e-11 seq132181 73.4 4e-11 seq65329 73.4 4e-11 seq18024 73.4 4e-11 >seq154384 Length=127 Score = 73.4 bits (80), Expect = 4e-11 Identities = 64/80 (80%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127 ||||||||||| ||||||||||| |||| || || | || || ||||||||| ||| Sbjct 92 GCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTTGTAAAACGATGTATAGGGTCTGA 33 Query 128 CGCCTGCCCGGTGCCGGAAG 147 | |||||||||||| | ||| Sbjct 32 CACCTGCCCGGTGCTGAAAG 13 >seq132181 Length=127 Score = 73.4 bits (80), Expect = 4e-11 Identities = 64/80 (80%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127 ||||||||||| ||||||||||| ||||||| || | || || |||||| || ||| Sbjct 11 GCGACTGTTTACTAAAAACACAGGACTCTGCTAAGTTGTAAAACGATGTATAGTGTCTGA 70 Query 128 CGCCTGCCCGGTGCCGGAAG 147 | |||||||||||| | ||| Sbjct 71 CACCTGCCCGGTGCTGAAAG 90 >seq65329 Length=127 Score = 73.4 bits (80), Expect = 4e-11 Identities = 64/80 (80%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127 ||||||||||| ||||||||||| ||||||| || | || || ||||||||| ||| Sbjct 127 GCGACTGTTTACTAAAAACACAGGACTCTGCTAAGTTGTAAAACGATGTATAGGGTCTGA 68 Query 128 CGCCTGCCCGGTGCCGGAAG 147 | | |||||||||| | ||| Sbjct 67 CACATGCCCGGTGCTGAAAG 48 >seq18024 Length=127 Score = 73.4 bits (80), Expect = 4e-11 Identities = 64/80 (80%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127 ||||||||||| ||||||||||| ||||||| || | || || ||||| ||| ||| Sbjct 12 GCGACTGTTTACTAAAAACACAGGACTCTGCTAAGTTGTAAAACGATGTATATGGTCTGA 71 Query 128 CGCCTGCCCGGTGCCGGAAG 147 | |||||||||||| | ||| Sbjct 72 CACCTGCCCGGTGCTGAAAG 91 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475775745988