Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000826485.1_202015-01- 07] 221,748 sequences; 115,049,889 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq19177 102 2e-19 seq19178 98.7 3e-18 seq88672 93.3 1e-16 seq65270 93.3 1e-16 seq36042 93.3 1e-16 seq30904 93.3 1e-16 seq32763 89.7 2e-15 seq161807 75.2 3e-11 seq102837 75.2 3e-11 >seq19177 Length=127 Score = 102 bits (112), Expect = 2e-19 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 ||||||||||||||| |||||||||| || |||||| | | |||||||||||||| Sbjct 7 TACGACCGCAAGGTTAAAACTCAAAGAAACTGACGGAAGATTGTATAAGCGGTGGAGCAT 66 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGA 104 ||||||||||| || ||||| ||||| |||||||| ||||| Sbjct 67 GTGGTTTAATTTGATATAACGCAAAGAATCTTACCAACCCTTGA 110 >seq19178 Length=127 Score = 98.7 bits (108), Expect = 3e-18 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 ||||||||||||||| |||||||||| || |||||| | | ||||||||||| || Sbjct 7 TACGACCGCAAGGTTAAAACTCAAAGAAACTGACGGAAGATTGTATAAGCGGTGGAGGAT 66 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGA 104 ||||||||||| || ||||| ||||| |||||||| ||||| Sbjct 67 GTGGTTTAATTTGATATAACGCAAAGAATCTTACCAACCCTTGA 110 >seq88672 Length=127 Score = 93.3 bits (102), Expect = 1e-16 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 ||||||||||||||| |||||||||| || |||||| | | |||||||| || || Sbjct 10 TACGACCGCAAGGTTAAAACTCAAAGAAACTGACGGAAGATTGTATAAGCGGTGTAGTAT 69 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGA 104 ||||||||||| || ||||| ||||| |||||||| ||||| Sbjct 70 GTGGTTTAATTTGATATAACGCAAAGAATCTTACCAACCCTTGA 113 >seq65270 Length=127 Score = 93.3 bits (102), Expect = 1e-16 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 ||||||||||||||| |||||||||| || |||||| | | |||| |||||| || Sbjct 14 TACGACCGCAAGGTTAAAACTCAAAGAAACTGACGGAAGATTGTATAAGCTGTGGAGTAT 73 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGA 104 ||||||||||| || ||||| ||||| |||||||| ||||| Sbjct 74 GTGGTTTAATTTGATATAACGCAAAGAATCTTACCAACCCTTGA 117 >seq36042 Length=127 Score = 93.3 bits (102), Expect = 1e-16 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 ||||||||||||||| |||||||||| || |||||| | | ||||||||||| || Sbjct 2 TACGACCGCAAGGTTAAAACTCAAAGAAACTGACGGAAGATTGTATAAGCGGTGGAGTAT 61 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGA 104 || |||||||| || ||||| ||||| |||||||| ||||| Sbjct 62 GTTGTTTAATTTGATATAACGCAAAGAATCTTACCAACCCTTGA 105 >seq30904 Length=127 Score = 93.3 bits (102), Expect = 1e-16 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 ||||||||||||||| |||||||||| || |||||| | | ||||||| ||| || Sbjct 11 TACGACCGCAAGGTTAAAACTCAAAGAAACTGACGGAAGATTGTATAAGCGGTTGAGTAT 70 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGA 104 ||||||||||| || ||||| ||||| |||||||| ||||| Sbjct 71 GTGGTTTAATTTGATATAACGCAAAGAATCTTACCAACCCTTGA 114 >seq32763 Length=127 Score = 89.7 bits (98), Expect = 2e-15 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 ||||||||||||||| |||||||||| || |||| | | | ||||||||||| || Sbjct 30 TACGACCGCAAGGTTAAAACTCAAAGAAACTGACTGAAGATTGTATAAGCGGTGGAGTAT 89 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAA 97 ||||||||||| || ||||| ||||| |||||||| Sbjct 90 GTGGTTTAATTTGATATAACGCAAAGAATCTTACCAA 126 >seq161807 Length=127 Score = 75.2 bits (82), Expect = 3e-11 Identities = 89/121 (74%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 368 AGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTG 427 ||| ||| ||||| | ||| |||| ||| || || ||||| |||| | | || Sbjct 7 AGCAAAAATGCGAGTTTTAGCTAATCATTAAAAATTAACCTTAGTTCTGATTATTCTATG 66 Query 428 CAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAAT 487 ||| |||| ||||||| ||||||||||||||||| ||| || ||||| |||||||| Sbjct 67 CAAGTCGAGAGTATGAAGTAGGAATCGCTAGTAATCGCAGAATAGAATGCTGCGGTGAAT 126 Query 488 A 488 | Sbjct 127 A 127 >seq102837 Length=127 Score = 75.2 bits (82), Expect = 3e-11 Identities = 71/91 (78%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 14 TTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCG 73 || |||||||||| || |||||| | | ||||||||||| ||||||||||||| | Sbjct 127 TTAAAACTCAAAGAAACTGACGGAAGATTGTATAAGCGGTGGAGTATGTGGTTTAATTTG 68 Query 74 AAGCAACGCGAAGAACCTTACCAAATCTTGA 104 | ||||| ||||| |||||||| ||||| Sbjct 67 ATAAAACGCAAAGAATCTTACCAACCCTTGA 37 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1500664910080