Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000826485.1_202015-01- 07] 221,748 sequences; 115,049,889 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq12608 179 6e-43 seq123555 174 2e-41 seq70464 163 5e-38 seq81027 161 2e-37 seq20340 143 4e-32 seq50388 136 6e-30 seq30369 136 6e-30 seq3494 129 9e-28 seq218478 93.3 7e-17 seq2377 91.5 2e-16 seq147389 89.7 8e-16 seq39843 86.0 1e-14 seq9622 86.0 1e-14 seq161107 75.2 2e-11 seq55688 75.2 2e-11 >seq12608 Length=127 Score = 179 bits (198), Expect = 6e-43 Identities = 102/104 (98%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 143 TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAA 202 ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| Sbjct 104 TATTTAGCAGGTTAAGGTCTCGTTCGTTAACGGAATTAACAAGACAAATCACTCCACCAA 45 Query 203 CTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGC 246 |||||||||||||||||||||||||||||||||||||||||||| Sbjct 44 CTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGC 1 >seq123555 Length=127 Score = 174 bits (192), Expect = 2e-41 Identities = 99/101 (98%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 158 GGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATG 217 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 127 GGTCTCGTTCGTTAACGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATG 68 Query 218 CACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||| ||||||||||||||||||||||||||||||||||||| Sbjct 67 CACAACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 27 >seq70464 Length=127 Score = 163 bits (180), Expect = 5e-38 Identities = 93/95 (98%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 164 GTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCAC 223 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 127 GTTCGTTAACGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCAC 68 Query 224 CACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||| ||||||||||||||||||||||||||||||| Sbjct 67 CACACATAGAATCAAGAAAGAGCTATCAATCTGTC 33 >seq81027 Length=127 Score = 161 bits (178), Expect = 2e-37 Identities = 92/94 (98%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 165 TTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACC 224 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 127 TTCGTTAACGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACC 68 Query 225 ACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||| |||||||||||||||||||||||||||||| Sbjct 67 ACCAATAGAATCAAGAAAGAGCTATCAATCTGTC 34 >seq20340 Length=82 Score = 143 bits (158), Expect = 4e-32 Identities = 81/82 (99%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 165 TTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACC 224 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TTCGTTAACGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACC 60 Query 225 ACCCATAGAATCAAGAAAGAGC 246 |||||||||||||||||||||| Sbjct 61 ACCCATAGAATCAAGAAAGAGC 82 >seq50388 Length=91 Score = 136 bits (150), Expect = 6e-30 Identities = 77/78 (99%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 143 TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAA 202 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 14 TATTTAGCAGGTTAAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCACTCCACCAA 73 Query 203 CTAAGAACGGCCATGCAC 220 |||||||||||||||||| Sbjct 74 CTAAGAACGGCCATGCAC 91 >seq30369 Length=97 Score = 136 bits (150), Expect = 6e-30 Identities = 75/75 (100%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 184 AGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAG 243 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAG 60 Query 244 AGCTATCAATCTGTC 258 ||||||||||||||| Sbjct 61 AGCTATCAATCTGTC 75 >seq3494 Length=132 Score = 129 bits (142), Expect = 9e-28 Identities = 82/89 (92%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 29 ACTCGTTGGATTAATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 88 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCT 90 |||||||||||||||||||||| ||||| Sbjct 89 CCTGTTATTGCCTCAAACTTCCGCTGGCT 117 >seq218478 Length=47695 Score = 93.3 bits (102), Expect = 7e-17 Identities = 68/78 (87%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 40 GAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC-CA 98 ||||||||||||||||| |||||||||||||||||||||||||| ||||| | ||| | Sbjct 6774 GAACATCTAAGGGCATCCCAGACCTGTTATTGCCTCAAACTTCCGCTGGCTAGGAGCGTA 6833 Query 99 ATAGTCCCTCTAAGAAGC 116 ||||||||||| |||| Sbjct 6834 GCAGTCCCTCTAATAAGC 6851 >seq2377 Length=127 Score = 91.5 bits (100), Expect = 2e-16 Identities = 66/75 (88%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 43 CATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC-CAATA 101 ||||||||||||||||||||||||||||||||||||||||| ||||| | || || | Sbjct 1 CATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGCTGGCTAGGCGCGCAGCA 60 Query 102 GTCCCTCTAAGAAGC 116 ||| ||||||||||| Sbjct 61 GTCACTCTAAGAAGC 75 >seq147389 Length=127 Score = 89.7 bits (98), Expect = 8e-16 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 44 ATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC-CAATAG 102 |||||||||||||||||||||||||||||||||||||||| ||||| | || || || Sbjct 127 ATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGCTGGCTAGGCGCGCAGCAG 68 Query 103 TCCCTCTAAGAAGC 116 ||| |||||||||| Sbjct 67 TCCATCTAAGAAGC 54 >seq39843 Length=73 Score = 86.0 bits (94), Expect = 1e-14 Identities = 49/50 (98%), Gaps = 0/50 (0%) Strand=Plus/Plus Query 143 TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATC 192 ||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 24 TATTTAGCAGGTTAAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATC 73 >seq9622 Length=127 Score = 86.0 bits (94), Expect = 1e-14 Identities = 49/50 (98%), Gaps = 0/50 (0%) Strand=Plus/Minus Query 143 TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATC 192 ||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 50 TATTTAGCAGGTTAAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATC 1 >seq161107 Length=127 Score = 75.2 bits (82), Expect = 2e-11 Identities = 41/41 (100%), Gaps = 0/41 (0%) Strand=Plus/Plus Query 218 CACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||||||||||||||||||||||||||||| Sbjct 1 CACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 41 >seq55688 Length=67 Score = 75.2 bits (82), Expect = 2e-11 Identities = 41/41 (100%), Gaps = 0/41 (0%) Strand=Plus/Minus Query 218 CACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||||||||||||||||||||||||||||| Sbjct 67 CACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 27 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795088327188