Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000826485.1_202015-01- 07] 221,748 sequences; 115,049,889 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq209193 251 1e-64 seq103747 203 6e-50 seq27049 192 1e-46 seq187917 158 2e-36 seq178786 152 9e-35 seq6558 123 4e-26 seq133300 122 1e-25 seq29090 111 3e-22 seq59263 96.9 6e-18 seq59262 96.9 6e-18 >seq209193 Length=1110 Score = 251 bits (278), Expect = 1e-64 Identities = 180/210 (86%), Gaps = 13/210 (6%) Strand=Plus/Plus Query 97 GGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGA 156 ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| Sbjct 877 GGTGAACAATCCAACGCTTGGCGAATTCTGCTTCGCAATGATAGGAAGAGCCGACATCGA 936 Query 157 AGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGG 216 ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 937 AGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGG 996 Query 217 TAACTTTTCTGGCACCTCTAGCCTCAAATTTCGA-------------GGGACTAAAGGAT 263 ||||||||||| |||||||||| |||||| ||| | ||||||||| Sbjct 997 TAACTTTTCTGACACCTCTAGCTTCAAATCCCGAAATATAAATAAACGACTCTAAAGGAT 1056 Query 264 CGATAGGCCACACTTTCATGGTTTGTATTC 293 |||||||||| |||||| |||||||||| Sbjct 1057 CGATAGGCCATGCTTTCACAGTTTGTATTC 1086 >seq103747 Length=127 Score = 203 bits (224), Expect = 6e-50 Identities = 121/127 (95%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 127 ATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATT 68 Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152 ||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||||| Sbjct 67 AGTTGGTGAACAATCCAACGCTTGGCGAATTCTGCTTCGCAATGATAGGAAGAGCCGACA 8 Query 153 TCGAAGG 159 ||||||| Sbjct 7 TCGAAGG 1 >seq27049 Length=119 Score = 192 bits (212), Expect = 1e-46 Identities = 114/119 (96%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 41 GGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTG 100 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 119 GGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTG 60 Query 101 AACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGG 159 ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct 59 AACAATCCAACGCTTGGCGAATTCTGCTTCGCAATGATAGGAAGAGCCGACATCGAAGG 1 >seq187917 Length=963 Score = 158 bits (174), Expect = 2e-36 Identities = 107/121 (88%), Gaps = 8/121 (7%) Strand=Plus/Plus Query 96 GGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCG 155 |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 770 GGGTGAACAATCCAACGCTTGGCGAATTCTGCTTCGCAATGATAGGAAGAGCCGACATC- 828 Query 156 AAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTG 215 ||||||| ||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 829 -------AAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTG 881 Query 216 G 216 | Sbjct 882 G 882 >seq178786 Length=4806 Score = 152 bits (168), Expect = 9e-35 Identities = 102/113 (90%), Gaps = 2/113 (2%) Strand=Plus/Minus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct 1484 CATCAGTAGGGTAAAACTAACCTGTCTCATGATGGTCTAAACCCAGCTCATGTTCCCTAT 1425 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAG 144 ||||||||||||||||||| |||| ||||||||||| | ||||| | ||| Sbjct 1424 TAGTGGGTGAACAATCCAATGCTTGGTGAATTCTGCTT--GCATGATGGAAAG 1374 >seq6558 Length=71 Score = 123 bits (136), Expect = 4e-26 Identities = 70/71 (99%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 71 ATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATT 12 Query 93 AGTGGGTGAAC 103 ||||||||||| Sbjct 11 AGTGGGTGAAC 1 >seq133300 Length=127 Score = 122 bits (134), Expect = 1e-25 Identities = 70/72 (97%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 56 CATCAGTATGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTAT 115 Query 92 TAGTGGGTGAAC 103 |||||||||||| Sbjct 116 TAGTGGGTGAAC 127 >seq29090 Length=71 Score = 111 bits (122), Expect = 3e-22 Identities = 63/64 (98%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 64 CATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTAT 5 Query 92 TAGT 95 |||| Sbjct 4 TAGT 1 >seq59263 Length=134 Score = 96.9 bits (106), Expect = 6e-18 Identities = 55/56 (98%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCC 87 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 56 CATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCC 1 >seq59262 Length=111 Score = 96.9 bits (106), Expect = 6e-18 Identities = 55/56 (98%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCC 87 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 56 CATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 852505385088