Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000826485.1_202015-01- 07] 221,748 sequences; 115,049,889 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq90229 105 1e-20 seq62041 105 1e-20 seq21122 98.7 2e-18 seq71320 96.9 7e-18 seq37706 96.9 7e-18 seq96594 95.1 3e-17 seq97748 93.3 9e-17 seq74778 93.3 9e-17 seq25567 93.3 9e-17 seq139822 91.5 3e-16 seq106301 91.5 3e-16 seq149051 87.8 4e-15 seq7732 87.8 4e-15 seq56734 73.4 8e-11 >seq90229 Length=127 Score = 105 bits (116), Expect = 1e-20 Identities = 100/124 (81%), Gaps = 3/124 (2%) Strand=Plus/Plus Query 42 CTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTC-T 100 || ||||| |||||||||||||||| ||||||| ||||||||||| | ||| || | | Sbjct 4 CTCGATCAAGCTTTCGCCCATTGTCAAATATTCTCCACTGCTGCC-CTTTTAGAAGACTT 62 Query 101 GGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGC 160 | |||| | ||||| ||| |||| |||||||| |||||| ||||| || | ||||||| Sbjct 63 GTGCCGT-TTTCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGG 121 Query 161 CTTG 164 |||| Sbjct 122 CTTG 125 >seq62041 Length=127 Score = 105 bits (116), Expect = 1e-20 Identities = 100/124 (81%), Gaps = 3/124 (2%) Strand=Plus/Plus Query 42 CTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTC-T 100 || ||||| |||||||||||||||| ||||||| ||||||||||| | ||| || | | Sbjct 5 CTCGATCAAGCTTTCGCCCATTGTCAAATATTCTCCACTGCTGCC-CTTTTAGAAGACTT 63 Query 101 GGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGC 160 | |||| | ||||| ||| |||| |||||||| |||||| ||||| || | ||||||| Sbjct 64 TGGCCGT-TTTCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGG 122 Query 161 CTTG 164 |||| Sbjct 123 CTTG 126 >seq21122 Length=127 Score = 98.7 bits (108), Expect = 2e-18 Identities = 99/125 (79%), Gaps = 3/125 (2%) Strand=Plus/Minus Query 53 TTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTC-TGGACCGTGTCT 111 |||||||||||||| ||||||| ||||||||||| | ||| || | ||| |||| | | Sbjct 127 TTTCGCCCATTGTCAAATATTCTCCACTGCTGCC-CTTTTAGAAGACTTGGGCCGT-TTT 70 Query 112 CAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCC 171 |||| || |||| |||||||| |||||| ||||| || | ||||||| |||| ||| Sbjct 69 CAGTCACAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCTTGTTGAATA 10 Query 172 ATTAC 176 ||||| Sbjct 9 ATTAC 5 >seq71320 Length=127 Score = 96.9 bits (106), Expect = 7e-18 Identities = 98/124 (79%), Gaps = 3/124 (2%) Strand=Plus/Minus Query 54 TTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTC-TGGACCGTGTCTC 112 ||||||||||||| ||||||| ||||||||||| | ||| || | ||| |||| | || Sbjct 127 TTCGCCCATTGTCAAATATTCTCCACTGCTGCC-CTTTTAGAAGACTTGGGCCGT-TTTC 70 Query 113 AGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCA 172 ||| | | |||| |||||||| |||||| ||||| || | ||||||| |||| ||| | Sbjct 69 AGTCCAAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCTTGTTGAATAA 10 Query 173 TTAC 176 |||| Sbjct 9 TTAC 6 >seq37706 Length=127 Score = 96.9 bits (106), Expect = 7e-18 Identities = 89/109 (82%), Gaps = 3/109 (3%) Strand=Plus/Minus Query 42 CTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTC-T 100 || ||||| |||||||||||||||| ||||||| ||||||||||| | ||| || | | Sbjct 112 CTCGATCAAGCTTTCGCCCATTGTCAAATATTCTCCACTGCTGCC-CTTCTAGAAGACTT 54 Query 101 GGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTA 149 || |||| | ||||| ||| |||| |||||||| |||||| ||||| || Sbjct 53 GGGCCGT-TTTCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTA 6 >seq96594 Length=127 Score = 95.1 bits (104), Expect = 3e-17 Identities = 100/128 (78%), Gaps = 3/128 (2%) Strand=Plus/Plus Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTC-TGGACCGTGTCTCAGTTCCA 119 |||||| ||||||| ||||||||||| | ||| || | ||| |||| | ||||| ||| Sbjct 1 ATTGTCAAATATTCTCCACTGCTGCC-CTTTTAGAAGACTTGGGCCGT-TTTCAGTCCCA 58 Query 120 GTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTC 179 |||| |||||||| |||||| ||||| || | ||||||| |||| ||| ||||| | Sbjct 59 ATGTGTCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCTTGTTGAATAATTACTAC 118 Query 180 ACCAACTA 187 | |||||| Sbjct 119 AACAACTA 126 >seq97748 Length=127 Score = 93.3 bits (102), Expect = 9e-17 Identities = 100/127 (79%), Gaps = 4/127 (3%) Strand=Plus/Minus Query 24 TCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCT 83 |||| |||| |||| || ||||| |||||||||||||||| ||||||| |||||||| Sbjct 125 TCACCCACGTAACATTA-CTCGATCAAGCTTTCGCCCATTGTCAAATATTCTCCACTGCT 67 Query 84 GCCTCCCGTAGGAGTC-TGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGA 142 | | | ||| || | ||| |||| | ||||| ||| |||| |||||||| |||||| | Sbjct 66 G-CACTTTTAGAAGACTTGGGCCGT-TTTCAGTCCCAATGTGGCTGATCATTCTCTCAAA 9 Query 143 CCAGTTA 149 |||| || Sbjct 8 CCAGCTA 2 >seq74778 Length=127 Score = 93.3 bits (102), Expect = 9e-17 Identities = 98/124 (79%), Gaps = 4/124 (3%) Strand=Plus/Plus Query 24 TCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCT 83 |||| |||| |||| || ||||| |||||||||||||||| ||||||| |||||||| Sbjct 5 TCACCCACGTAACATTA-CTCGATCAAGCTTTCGCCCATTGTCAAATATTCTCCACTGCT 63 Query 84 GCCTCCCGTAGGAGTC-TGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGA 142 || | ||| || | ||| |||| | ||||| ||| |||| |||||||| |||||| | Sbjct 64 TCC-CTTTTAGAAGACTTGGGCCGT-TTTCAGTCCCAATGTGGCTGATCATTCTCTCAAA 121 Query 143 CCAG 146 |||| Sbjct 122 CCAG 125 >seq25567 Length=127 Score = 93.3 bits (102), Expect = 9e-17 Identities = 100/127 (79%), Gaps = 4/127 (3%) Strand=Plus/Plus Query 24 TCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCT 83 |||| |||| |||| || ||||| |||||||||||||||| ||||||| |||||||| Sbjct 2 TCACCCACGTAACATTA-CTCGATCAAGCTTTCGCCCATTGTCAAATATTCTCCACTGCT 60 Query 84 GCCTCCCGTAGGAGTC-TGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGA 142 ||| ||| || | ||| |||| | ||||| ||| |||| |||||||| |||||| | Sbjct 61 GCC-ATTTTAGAAGACTTGGGCCGT-TTTCAGTCCCAATGTGGCTGATCATTCTCTCAAA 118 Query 143 CCAGTTA 149 |||| || Sbjct 119 CCAGCTA 125 >seq139822 Length=127 Score = 91.5 bits (100), Expect = 3e-16 Identities = 97/123 (79%), Gaps = 4/123 (3%) Strand=Plus/Plus Query 24 TCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCT 83 |||| |||| |||| || ||||| |||||||||||||||| ||||||| ||||| || Sbjct 8 TCACCCACGTAACATTA-CTCGATCAAGCTTTCGCCCATTGTCAAATATTCTCCACTTCT 66 Query 84 GCCTCCCGTAGGAGTC-TGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGA 142 ||| | ||| || | ||| |||| | ||||| ||| |||| |||||||| |||||| | Sbjct 67 GCC-CTTTTAGAAGACTTGGGCCGT-TTTCAGTCCCAATGTGGCTGATCATTCTCTCAAA 124 Query 143 CCA 145 ||| Sbjct 125 CCA 127 >seq106301 Length=127 Score = 91.5 bits (100), Expect = 3e-16 Identities = 100/129 (78%), Gaps = 3/129 (2%) Strand=Plus/Plus Query 60 CATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTC-TGGACCGTGTCTCAGTTCC 118 ||||||| ||||||| ||||||||||| | ||| || | ||| |||| | ||||| || Sbjct 1 CATTGTCAAATATTCTCCACTGCTGCC-CTTTTAGAAGACTTGGGCCGT-TTTCAGTCCC 58 Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCT 178 | ||| |||||||| |||||| ||||| || | ||||||| |||| ||| ||||| Sbjct 59 AATGTTGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCTTGTTGAATAATTACTA 118 Query 179 CACCAACTA 187 || |||||| Sbjct 119 CAACAACTA 127 >seq149051 Length=127 Score = 87.8 bits (96), Expect = 4e-15 Identities = 99/126 (79%), Gaps = 5/126 (4%) Strand=Plus/Minus Query 17 CCTTCTT-TCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCC 75 |||||| |||| |||| |||| || ||||| |||||||||||||||| ||||||| Sbjct 124 CCTTCTGATCACCCACGTAACATTA-CTCGATCAAGCTTTCGCCCATTGTCAAATATTCT 66 Query 76 CCACTGCTGCCTCCCGTAGGAGTC-TGGACCGTGTCTCAGTTCCAGTGTGACTGATCATC 134 | ||||||||| | ||| || | ||| |||| | ||||| ||| |||| |||||||| Sbjct 65 CAACTGCTGCC-CTTTTAGAAGACTTGGGCCGT-TTTCAGTCCCAATGTGGCTGATCATT 8 Query 135 CTCTCA 140 |||||| Sbjct 7 CTCTCA 2 >seq7732 Length=127 Score = 87.8 bits (96), Expect = 4e-15 Identities = 99/126 (79%), Gaps = 5/126 (4%) Strand=Plus/Plus Query 17 CCTTCTT-TCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCC 75 |||||| |||| |||| |||| || ||||| |||||||||||||||| ||||||| Sbjct 5 CCTTCTGATCACCCACGTAACATTA-CTCGATCAAGCTTTCGCCCATTGTCAAATATTCT 63 Query 76 CCACTGCTGCCTCCCGTAGGAGTC-TGGACCGTGTCTCAGTTCCAGTGTGACTGATCATC 134 |||||||||| | ||| || | ||| |||| | ||||| ||| |||| |||||||| Sbjct 64 ACACTGCTGCC-CTTTTAGAAGACTTGGGCCGT-TTTCAGTCCCAATGTGGCTGATCATT 121 Query 135 CTCTCA 140 |||||| Sbjct 122 CTCTCA 127 >seq56734 Length=127 Score = 73.4 bits (80), Expect = 8e-11 Identities = 89/115 (77%), Gaps = 5/115 (4%) Strand=Plus/Plus Query 17 CCTTCTT-TCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCC 75 |||||| |||| |||| |||| || ||||| |||||||||||||| | ||||||| Sbjct 16 CCTTCTGATCACCCACGTAACATTA-CTCGATCAAGCTTTCGCCCATTGCCAAATATTCT 74 Query 76 CCACTGCTGCCTCCCGTAGGAGTC-TGGACCGTGTCTCAGTTCCAGTGTGACTGA 129 ||||||||||| | ||| || | ||| |||| | ||||| ||| |||| |||| Sbjct 75 CCACTGCTGCC-CTTTTAGAAGACTTGGGCCGT-TTTCAGTCCCAATGTGGCTGA 127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1069622861440