Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000826485.1_202015-01- 07] 221,748 sequences; 115,049,889 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq90229 84.2 4e-14 seq62041 84.2 4e-14 seq21122 82.4 2e-13 seq71320 80.6 5e-13 seq68045 75.2 2e-11 seq37706 75.2 2e-11 seq106301 73.4 8e-11 seq96594 73.4 8e-11 >seq90229 Length=127 Score = 84.2 bits (92), Expect = 4e-14 Identities = 93/120 (78%), Gaps = 3/120 (3%) Strand=Plus/Plus Query 12 ATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGG-GC 70 |||| | |||| |||||||| ||||| | ||||||||||| | ||| || || | || Sbjct 8 ATCAAGCTTTCGCCCATTGTCAAATATTCTCCACTGCTGCC-CTTTTAGAAGACTTGTGC 66 Query 71 CGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTG 130 ||| | |||||||||||||||| | ||| |||||| || |||| |||||||||||| Sbjct 67 CGTTT-TCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCTTG 125 >seq62041 Length=127 Score = 84.2 bits (92), Expect = 4e-14 Identities = 93/120 (78%), Gaps = 3/120 (3%) Strand=Plus/Plus Query 12 ATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTG-GGC 70 |||| | |||| |||||||| ||||| | ||||||||||| | ||| || || ||| Sbjct 9 ATCAAGCTTTCGCCCATTGTCAAATATTCTCCACTGCTGCC-CTTTTAGAAGACTTTGGC 67 Query 71 CGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTG 130 ||| | |||||||||||||||| | ||| |||||| || |||| |||||||||||| Sbjct 68 CGTTT-TCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCTTG 126 >seq21122 Length=127 Score = 82.4 bits (90), Expect = 2e-13 Identities = 90/116 (78%), Gaps = 3/116 (3%) Strand=Plus/Minus Query 19 TTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT-GGGCCGTGTCT 77 |||| |||||||| ||||| | ||||||||||| | ||| || || ||||||| | | Sbjct 127 TTTCGCCCATTGTCAAATATTCTCCACTGCTGCC-CTTTTAGAAGACTTGGGCCGTTT-T 70 Query 78 CAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTG 133 ||||| ||||||||| | ||| |||||| || |||| |||||||||||| || Sbjct 69 CAGTCACAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCTTGTTG 14 >seq71320 Length=127 Score = 80.6 bits (88), Expect = 5e-13 Identities = 89/115 (77%), Gaps = 3/115 (3%) Strand=Plus/Minus Query 20 TTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT-GGGCCGTGTCTC 78 ||| |||||||| ||||| | ||||||||||| | ||| || || ||||||| | || Sbjct 127 TTCGCCCATTGTCAAATATTCTCCACTGCTGCC-CTTTTAGAAGACTTGGGCCGTTT-TC 70 Query 79 AGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTG 133 ||||| |||||||| | ||| |||||| || |||| |||||||||||| || Sbjct 69 AGTCCAAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCTTGTTG 15 >seq68045 Length=127 Score = 75.2 bits (82), Expect = 2e-11 Identities = 91/120 (76%), Gaps = 3/120 (3%) Strand=Plus/Minus Query 42 CCACTGCTGCCTCCCGTAGGAGTCT-GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAAC 100 ||||||||||| | ||| || || ||||||| | |||||||||||||||| | ||| Sbjct 126 CCACTGCTGCC-CTTTTAGAAGACTTGGGCCGTTT-TCAGTCCCAATGTGGCTGATCATT 69 Query 101 CTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATC 160 |||| | || |||| |||||||||||| || |||| || ||||||||||||| Sbjct 68 CTCTAAAACCAGCTAAGCATCGTCGGCTTGTTGAATAATTACTACAACAACTACCTAATC 9 >seq37706 Length=127 Score = 75.2 bits (82), Expect = 2e-11 Identities = 82/105 (78%), Gaps = 3/105 (3%) Strand=Plus/Minus Query 12 ATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTC-TGGGC 70 |||| | |||| |||||||| ||||| | ||||||||||| | ||| || | ||||| Sbjct 108 ATCAAGCTTTCGCCCATTGTCAAATATTCTCCACTGCTGCC-CTTCTAGAAGACTTGGGC 50 Query 71 CGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTA 115 ||| | |||||||||||||||| | ||| |||||| || |||| Sbjct 49 CGT-TTTCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTA 6 >seq106301 Length=127 Score = 73.4 bits (80), Expect = 8e-11 Identities = 84/109 (77%), Gaps = 3/109 (3%) Strand=Plus/Plus Query 26 CATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT-GGGCCGTGTCTCAGTCCC 84 |||||| ||||| | ||||||||||| | ||| || || ||||||| | |||||||| Sbjct 1 CATTGTCAAATATTCTCCACTGCTGCC-CTTTTAGAAGACTTGGGCCGTTT-TCAGTCCC 58 Query 85 AATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTG 133 ||||| || | ||| |||||| || |||| |||||||||||| || Sbjct 59 AATGTTGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCTTGTTG 107 >seq96594 Length=127 Score = 73.4 bits (80), Expect = 8e-11 Identities = 96/129 (74%), Gaps = 3/129 (2%) Strand=Plus/Plus Query 27 ATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT-GGGCCGTGTCTCAGTCCCA 85 ||||| ||||| | ||||||||||| | ||| || || ||||||| | ||||||||| Sbjct 1 ATTGTCAAATATTCTCCACTGCTGCC-CTTTTAGAAGACTTGGGCCGTTT-TCAGTCCCA 58 Query 86 ATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTC 145 ||||| | | ||| |||||| || |||| |||||||||||| || |||| | Sbjct 59 ATGTGTCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCTTGTTGAATAATTACTAC 118 Query 146 ACCAACTAC 154 | ||||||| Sbjct 119 AACAACTAC 127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 996186067968