Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000826485.1_202015-01- 07] 221,748 sequences; 115,049,889 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq44905 78.8 1e-12 seq112410 75.2 1e-11 >seq44905 Length=127 Score = 78.8 bits (86), Expect = 1e-12 Identities = 91/121 (75%), Gaps = 15/121 (12%) Strand=Plus/Plus Query 10 AAACCAAC--AAAATAGGGACGCACG-TCCTATTCTATTATTCCATGCTAATGTATTCGG 66 |||||||| |||||||| || | |||||||| ||||| |||||||||||||||| | Sbjct 6 AAACCAACTGAAAATAGGAGGACAGGGTCCTATTCCATTATCCCATGCTAATGTATTCTG 65 Query 67 --GCGTAA----------GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTG 114 || || |||||||||||||||||||||||| ||| |||||| | ||| Sbjct 66 TGGCAGAAAATTGGATCTGCCTGCTTTGAACACTCTAATTTTTTCACGGTAAACGATCTG 125 Query 115 G 115 | Sbjct 126 G 126 >seq112410 Length=94 Score = 75.2 bits (82), Expect = 1e-11 Identities = 72/93 (77%), Gaps = 12/93 (13%) Strand=Plus/Minus Query 35 CCTATTCTATTATTCCATGCTAATGTATTCGG--GCGTAA----------GCCTGCTTTG 82 ||||||| ||||| |||||||||||||||||| || || |||||||||| Sbjct 94 CCTATTCCATTATCCCATGCTAATGTATTCGGTGGCAGAAAATTGGATCTGCCTGCTTTG 35 Query 83 AACACTCTAATTTTCTCAAGGTAAAAGTCCTGG 115 |||||||||||||| ||| |||||| | |||| Sbjct 34 AACACTCTAATTTTTTCACGGTAAACGATCTGG 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593921401032