Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000826485.1_202015-01- 07] 221,748 sequences; 115,049,889 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq65668 100 5e-19 seq160909 91.5 2e-16 seq138294 91.5 2e-16 seq134124 91.5 2e-16 seq25167 91.5 2e-16 seq17520 91.5 2e-16 seq166550 86.0 1e-14 seq162684 86.0 1e-14 seq110447 86.0 1e-14 seq108011 86.0 1e-14 seq97778 86.0 1e-14 seq617 86.0 1e-14 seq16011 84.2 4e-14 seq16010 80.6 4e-13 seq16009 80.6 4e-13 seq113493 77.0 5e-12 seq18426 77.0 5e-12 seq65622 75.2 2e-11 seq34328 75.2 2e-11 seq1068 75.2 2e-11 >seq65668 Length=127 Score = 100 bits (110), Expect = 5e-19 Identities = 84/103 (82%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || ||||| | ||||||||||||| | ||| || ||||| ||||||| || ||||||||| Sbjct 110 CCACCTACGCACCCTTTACACCCAGTCAATGCGAATAACACTTGCCATCTCCGTATTACC 51 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||| ||||||||||| |||||| | ||||| | | ||| ||| Sbjct 50 GCGACTGCTGGCACGAAGTTAGTCAGGGCTTCTCCTTCAAGTA 8 >seq160909 Length=127 Score = 91.5 bits (100), Expect = 2e-16 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || ||||| | ||||||||||||| | ||| || ||||| |||||| | ||||||||| Sbjct 16 CCACCTACGCACCCTTTACACCCAGTCAATGCGAATAACACTTGCCCTATCCGTATTACC 75 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||| ||||||||||| |||||| | ||||| | | ||| ||| Sbjct 76 GCGACTGCTGGCACGAAGTTAGTCAGGGCTTCTCCTTCAAGTA 118 >seq138294 Length=127 Score = 91.5 bits (100), Expect = 2e-16 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || ||||| | ||||||||||||| | ||| || ||||| |||||| || |||||||| Sbjct 115 CCACCTACGCACCCTTTACACCCAGTCAATGCGAATAACACTTGCCCTCTCAGTATTACC 56 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||| ||||||||||| |||||| | ||||| | | ||| ||| Sbjct 55 GCGACTGCTGGCACGAAGTTAGTCAGGGCTTCTCCTTCAAGTA 13 >seq134124 Length=127 Score = 91.5 bits (100), Expect = 2e-16 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || ||||| | ||||||||||||| | ||| || ||||| |||||| || |||||||| Sbjct 123 CCACCTACGCACCCTTTACACCCAGTCAATGCGAATAACACTTGCCCTCTCCGTATTACA 64 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||| ||||||||||| |||||| | ||||| | | ||| ||| Sbjct 63 GCGACTGCTGGCACGAAGTTAGTCAGGGCTTCTCCTTCAAGTA 21 >seq25167 Length=127 Score = 91.5 bits (100), Expect = 2e-16 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || ||||| | ||||||||||||| | ||| || ||||| ||||| || ||||||||| Sbjct 19 CCACCTACGCACCCTTTACACCCAGTCAATGCGAATAACACTTGCACTCTCCGTATTACC 78 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||| ||||||||||| |||||| | ||||| | | ||| ||| Sbjct 79 GCGACTGCTGGCACGAAGTTAGTCAGGGCTTCTCCTTCAAGTA 121 >seq17520 Length=127 Score = 91.5 bits (100), Expect = 2e-16 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || ||||| | ||||||||||||| | ||| || ||||| |||||| || |||||||| Sbjct 123 CCACCTACGCACCCTTTACACCCAGTCAATGCGAATAACACTTGCCCTCTCCGTATTACT 64 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||| ||||||||||| |||||| | ||||| | | ||| ||| Sbjct 63 GCGACTGCTGGCACGAAGTTAGTCAGGGCTTCTCCTTCAAGTA 21 >seq166550 Length=127 Score = 86.0 bits (94), Expect = 1e-14 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 199 CCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGG 258 ||||||||||||| | ||| || ||||| |||||| || |||||||||||| ||||||| Sbjct 2 CCCTTTACACCCAGTCAATGCGAATAACACTTGCCCTCTCCGTATTACCGCGACTGCTGG 61 Query 259 CACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 || | |||||| | ||||| | | ||| ||| Sbjct 62 CATGAAGTTAGTCAGGGCTTCTCCTTCAAGTA 93 >seq162684 Length=127 Score = 86.0 bits (94), Expect = 1e-14 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || ||||| | |||||||||| || | ||| || ||||| |||||| || ||||||||| Sbjct 85 CCACCTACGCACCCTTTACACACAGTCAATGCGAATAACACTTGCCCTCTCCGTATTACC 26 Query 248 GCGGCTGCTGGCACGTAGTTAG 269 ||| ||||||||||| |||||| Sbjct 25 GCGACTGCTGGCACGAAGTTAG 4 >seq110447 Length=127 Score = 86.0 bits (94), Expect = 1e-14 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || ||||| | ||||||||||| | | ||| || ||||| |||||| || ||||||||| Sbjct 86 CCACCTACGCACCCTTTACACCAAGTCAATGCGAATAACACTTGCCCTCTCCGTATTACC 27 Query 248 GCGGCTGCTGGCACGTAGTTAG 269 ||| ||||||||||| |||||| Sbjct 26 GCGACTGCTGGCACGAAGTTAG 5 >seq108011 Length=127 Score = 86.0 bits (94), Expect = 1e-14 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || ||||| | |||||||| |||| | ||| || ||||| |||||| || ||||||||| Sbjct 83 CCACCTACGCACCCTTTACCCCCAGTCAATGCGAATAACACTTGCCCTCTCCGTATTACC 24 Query 248 GCGGCTGCTGGCACGTAGTTAG 269 ||| ||||||||||| |||||| Sbjct 23 GCGACTGCTGGCACGAAGTTAG 2 >seq97778 Length=127 Score = 86.0 bits (94), Expect = 1e-14 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 199 CCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGG 258 ||||||||||||| | ||| || ||||| |||||| || |||||||||||| ||||||| Sbjct 1 CCCTTTACACCCAGTCAATGCGAATAACACTTGCCCTCTCCGTATTACCGCGACTGCTGG 60 Query 259 CACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||| |||||| | ||||| | | ||| ||| Sbjct 61 CACTAAGTTAGTCAGGGCTTCTCCTTCAAGTA 92 >seq617 Length=127 Score = 86.0 bits (94), Expect = 1e-14 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 199 CCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGG 258 ||||||||||||| | ||| || ||||| |||||| || |||||||||||| ||||| | Sbjct 6 CCCTTTACACCCAGTCAATGCGAATAACACTTGCCCTCTCCGTATTACCGCGACTGCTTG 65 Query 259 CACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||| |||||| | ||||| | | ||| ||| Sbjct 66 CACGAAGTTAGTCAGGGCTTCTCCTTCAAGTA 97 >seq16011 Length=127 Score = 84.2 bits (92), Expect = 4e-14 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || ||||| ||||||||||||||| | ||| || ||||| |||||| || ||||||||| Sbjct 74 CCACCTACGCGCCCTTTACACCCAGTCAATGCGAATAACACTTGCCCTCTCCGTATTACC 15 Query 248 GCGGCTGCTGGCAC 261 ||| |||||||||| Sbjct 14 GCGACTGCTGGCAC 1 >seq16010 Length=127 Score = 80.6 bits (88), Expect = 4e-13 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || ||||| | ||||||||||||| | ||| || ||||| |||||| || ||||||||| Sbjct 74 CCACCTACGCTCCCTTTACACCCAGTCAATGCGAATAACACTTGCCCTCTCCGTATTACC 15 Query 248 GCGGCTGCTGGCAC 261 ||| |||||||||| Sbjct 14 GCGACTGCTGGCAC 1 >seq16009 Length=127 Score = 80.6 bits (88), Expect = 4e-13 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || ||||| | ||||||||||||| | ||| || ||||| |||||| || ||||||||| Sbjct 74 CCACCTACGCCCCCTTTACACCCAGTCAATGCGAATAACACTTGCCCTCTCCGTATTACC 15 Query 248 GCGGCTGCTGGCAC 261 ||| |||||||||| Sbjct 14 GCGACTGCTGGCAC 1 >seq113493 Length=127 Score = 77.0 bits (84), Expect = 5e-12 Identities = 62/75 (83%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || ||||| | || |||||||||| | ||| || ||||| |||||| || ||||||||| Sbjct 77 CCACCTACGCACCATTTACACCCAGTCAATGCGAATAACACTTGCCCTCTCCGTATTACC 18 Query 248 GCGGCTGCTGGCACG 262 ||| ||||||||||| Sbjct 17 GCGACTGCTGGCACG 3 >seq18426 Length=127 Score = 77.0 bits (84), Expect = 5e-12 Identities = 62/75 (83%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || ||||| | | ||||||||||| | ||| || ||||| |||||| || ||||||||| Sbjct 52 CCACCTACGCACACTTTACACCCAGTCAATGCGAATAACACTTGCCCTCTCCGTATTACC 111 Query 248 GCGGCTGCTGGCACG 262 ||| ||||||||||| Sbjct 112 GCGACTGCTGGCACG 126 >seq65622 Length=127 Score = 75.2 bits (82), Expect = 2e-11 Identities = 62/76 (82%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 215 AATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTG 274 ||| || ||||| |||||| || |||||||||||| ||||||||||| |||||| | || Sbjct 6 AATGCGAATAACACTTGCCCTCTCCGTATTACCGCGACTGCTGGCACGAAGTTAGTCATG 65 Query 275 GCTTATTCCTCAGGTA 290 |||| | | ||| ||| Sbjct 66 GCTTCTCCTTCAAGTA 81 >seq34328 Length=65 Score = 75.2 bits (82), Expect = 2e-11 Identities = 55/64 (86%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 199 CCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGG 258 ||||||||||||| | ||| || ||||| |||||| || |||||||||||| ||||||| Sbjct 65 CCCTTTACACCCAGTCAATGCGAATAACACTTGCCCTCTCCGTATTACCGCGACTGCTGG 6 Query 259 CACG 262 |||| Sbjct 5 CACG 2 >seq1068 Length=76 Score = 75.2 bits (82), Expect = 2e-11 Identities = 58/69 (84%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 201 CTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCA 260 ||||||||||| | ||| || ||||| |||||| || |||||||||||| ||||||||| Sbjct 1 CTTTACACCCAGTCAATGCGAATAACACTTGCCCTCTCCGTATTACCGCGACTGCTGGCA 60 Query 261 CGTAGTTAG 269 || ||||| Sbjct 61 CGACGTTAG 69 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 827019585308