Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000826485.1_202015-01- 07] 221,748 sequences; 115,049,889 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq112541 131 3e-28 seq120395 125 1e-26 seq20023 123 4e-26 seq125100 122 1e-25 seq21805 122 1e-25 seq36788 118 2e-24 seq96602 116 6e-24 seq134699 114 2e-23 seq20783 114 2e-23 seq86224 113 7e-23 seq53191 111 2e-22 seq14460 109 9e-22 seq106545 104 4e-20 seq167055 102 1e-19 seq142552 102 1e-19 seq67849 100 4e-19 seq2863 100 4e-19 seq129888 89.7 8e-16 seq112540 87.8 3e-15 seq30401 84.2 3e-14 seq156791 82.4 1e-13 seq118609 82.4 1e-13 seq131616 80.6 4e-13 seq955 78.8 1e-12 seq138424 77.0 5e-12 seq167054 75.2 2e-11 seq166504 75.2 2e-11 seq23748 75.2 2e-11 seq134714 73.4 6e-11 seq73251 73.4 6e-11 >seq112541 Length=127 Score = 131 bits (144), Expect = 3e-28 Identities = 101/120 (84%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 156 GACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAAT 215 ||| |||||| ||||||||||||| ||||||||| |||||| ||| ||| || ||||||| Sbjct 3 GACAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTTAAT 62 Query 216 GGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 |||||||||| ||||||||| ||| || |||| |||||||| || ||| |||||||| Sbjct 63 ATGCGAACAGCCTAACCCTTGGAACCGCCTGCAGCTCCAGGATGTGATGAGTCGACATCG 122 >seq120395 Length=127 Score = 125 bits (138), Expect = 1e-26 Identities = 92/107 (86%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 156 GACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAAT 215 ||| |||||| ||||||||||||| ||||||||| |||||| ||||||| || ||||||| Sbjct 109 GACAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCGCGTACCACTTTAAT 50 Query 216 GGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGA 262 ||||||||||| ||||||||| ||| || |||| |||||||| || Sbjct 49 AGGCGAACAGCCTAACCCTTGGAACCGCCTGCAGCTCCAGGATGTGA 3 >seq20023 Length=127 Score = 123 bits (136), Expect = 4e-26 Identities = 94/111 (85%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 156 GACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAAT 215 ||| |||||| ||||||||||||| ||||||||| |||||| ||| ||| || ||||||| Sbjct 113 GACAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGTTCCACTTTAAT 54 Query 216 GGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAG 266 ||||||||||| ||||||||| ||| || |||| |||||||| || ||| Sbjct 53 AGGCGAACAGCCTAACCCTTGGAACCGCCTGCAGCTCCAGGATGTGATGAG 3 >seq125100 Length=127 Score = 122 bits (134), Expect = 1e-25 Identities = 96/115 (83%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 156 GACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAAT 215 ||| |||||| ||||||||||||| ||||||||| |||||| ||| ||| | ||||||| Sbjct 115 GACAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGTACAACTTTAAT 56 Query 216 GGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGA 270 ||||||||||| ||||||||| ||| || |||| |||||||| || ||| ||| Sbjct 55 AGGCGAACAGCCTAACCCTTGGAACCGCCTGCAGCTCCAGGATGTGATGAGTCGA 1 >seq21805 Length=127 Score = 122 bits (134), Expect = 1e-25 Identities = 94/112 (84%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 164 GGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAAC 223 || ||||||||||||| ||||||||| |||||| ||| ||| || ||||||| ||||||| Sbjct 127 GGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTTAATAGGCGAAC 68 Query 224 AGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| ||||||||| ||| || |||| |||||||| || ||| |||||||| Sbjct 67 AGCATAACCCTTGGAACCGCCTGCAGCTCCAGGATGTGATGAGTCGACATCG 16 >seq36788 Length=127 Score = 118 bits (130), Expect = 2e-24 Identities = 91/108 (84%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 168 CCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCC 227 |||||||||||| ||||||||| |||||| ||| ||| || ||||||| ||||||||||| Sbjct 1 CCGAACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTTAATAGGCGAACAGCC 60 Query 228 CAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 || |||||| ||| || |||| |||||||| || ||| |||||||| Sbjct 61 TAAACCTTGGAACCGCCTGCAGCTCCAGGATGTGATGAGTCGACATCG 108 >seq96602 Length=127 Score = 116 bits (128), Expect = 6e-24 Identities = 90/107 (84%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 169 CGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCC 228 ||||||||||| ||||||||| |||||| ||| ||| || ||||||| ||||||||||| Sbjct 127 CGAACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTTAATAGGCGAACAGCCT 68 Query 229 AACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| ||||| ||| || |||| |||||||| || ||| |||||||| Sbjct 67 AACACTTGGAACCGCCTGCAGCTCCAGGATGTGATGAGTCGACATCG 21 >seq134699 Length=127 Score = 114 bits (126), Expect = 2e-23 Identities = 89/106 (84%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 170 GAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCA 229 |||||||||| ||||||||| |||||| ||| ||| || ||||||| ||||||||||| | Sbjct 127 GAACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTTAATAGGCGAACAGCCTA 68 Query 230 ACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| |||| ||| || |||| |||||||| || ||| |||||||| Sbjct 67 ACCATTGGAACCGCCTGCAGCTCCAGGATGTGATGAGTCGACATCG 22 >seq20783 Length=127 Score = 114 bits (126), Expect = 2e-23 Identities = 87/103 (84%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 156 GACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAAT 215 ||| |||||| ||||||||||||| ||||||||| |||| | ||| ||| || ||||||| Sbjct 103 GACAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCAAACTCACGTACCACTTTAAT 44 Query 216 GGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGAT 258 ||||||||||| ||||||||| ||| || |||| ||||||| Sbjct 43 AGGCGAACAGCCTAACCCTTGGAACCGCCTGCAGCTCCAGGAT 1 >seq86224 Length=127 Score = 113 bits (124), Expect = 7e-23 Identities = 86/102 (84%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 156 GACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAAT 215 ||| |||||| ||||||||||||| ||||||||| ||| || ||| ||| || ||||||| Sbjct 102 GACAGATAGGAACCGAACTGTCTCACGACGTTCTAAACACAACTCACGTACCACTTTAAT 43 Query 216 GGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGA 257 ||||||||||| ||||||||| ||| || |||| |||||| Sbjct 42 AGGCGAACAGCCTAACCCTTGGAACCGCCTGCAGCTCCAGGA 1 >seq53191 Length=127 Score = 111 bits (122), Expect = 2e-22 Identities = 87/104 (84%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 172 ACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAAC 231 |||||||| ||||||||| |||||| ||| ||| || ||||||| ||||||||||| ||| Sbjct 127 ACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTTAATAGGCGAACAGCCTAAC 68 Query 232 CCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| || ||| || |||| |||||||| || ||| |||||||| Sbjct 67 CCTCGGAACCGCCTGCAGCTCCAGGATGTGATGAGTCGACATCG 24 >seq14460 Length=127 Score = 109 bits (120), Expect = 9e-22 Identities = 81/95 (85%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 181 CGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGAC 240 ||||||||| |||||| ||| ||| || ||||||| ||||||||||| ||||||||| || Sbjct 3 CGACGTTCTAAACCCAACTCACGTACCACTTTAATAGGCGAACAGCCTAACCCTTGGAAC 62 Query 241 CTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 || || |||| |||||||| || ||| |||||||| Sbjct 63 CTCCTGCAGCTCCAGGATGTGATGAGTCGACATCG 97 >seq106545 Length=127 Score = 104 bits (114), Expect = 4e-20 Identities = 80/95 (84%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 156 GACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAAT 215 ||| |||||| ||||||||||||| ||||||| | |||||| ||| ||| || ||||||| Sbjct 96 GACAGATAGGAACCGAACTGTCTCACGACGTTATAAACCCAACTCACGTACCACTTTAAT 37 Query 216 GGGCGAACAGCCCAACCCTTGGGACCTACTTCAGC 250 ||||||||||| ||||||||| ||| || |||| Sbjct 36 AGGCGAACAGCCTAACCCTTGGAACCGCCTGCAGC 2 >seq167055 Length=127 Score = 102 bits (112), Expect = 1e-19 Identities = 74/86 (86%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 156 GACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAAT 215 ||| |||||| |||||||||||| ||||||||| |||||| ||| ||| || ||||||| Sbjct 87 GACAGATAGGAACCGAACTGTCTAACGACGTTCTAAACCCAACTCACGTACCACTTTAAT 28 Query 216 GGGCGAACAGCCCAACCCTTGGGACC 241 ||||||||||| ||||||||| ||| Sbjct 27 AGGCGAACAGCCTAACCCTTGGAACC 2 >seq142552 Length=127 Score = 102 bits (112), Expect = 1e-19 Identities = 74/86 (86%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 156 GACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAAT 215 ||| |||||| ||||||||||||| | ||||||| |||||| ||| ||| || ||||||| Sbjct 38 GACAGATAGGAACCGAACTGTCTCACTACGTTCTAAACCCAACTCACGTACCACTTTAAT 97 Query 216 GGGCGAACAGCCCAACCCTTGGGACC 241 ||||||||||| ||||||||| ||| Sbjct 98 AGGCGAACAGCCTAACCCTTGGAACC 123 >seq67849 Length=127 Score = 100 bits (110), Expect = 4e-19 Identities = 79/95 (83%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 181 CGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGAC 240 ||||||||| |||||| ||| ||| || ||||||| ||||||||||| ||||||||| || Sbjct 127 CGACGTTCTAAACCCAACTCACGTACCACTTTAATAGGCGAACAGCCTAACCCTTGGAAC 68 Query 241 CTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 | | |||| |||||||| || ||| |||||||| Sbjct 67 CGCATGCAGCTCCAGGATGTGATGAGTCGACATCG 33 >seq2863 Length=127 Score = 100 bits (110), Expect = 4e-19 Identities = 81/98 (83%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 178 TCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGG 237 || ||||||||| |||||| ||| ||| || ||||||| ||||||||||| ||||||||| Sbjct 127 TCACGACGTTCTAAACCCAACTCACGTACCACTTTAATAGGCGAACAGCCTAACCCTTGG 68 Query 238 GACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 || || |||| |||||||| || ||| |||||||| Sbjct 67 AACAGCCTGCAGCTCCAGGATGTGATGAGTCGACATCG 30 >seq129888 Length=127 Score = 89.7 bits (98), Expect = 8e-16 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 156 GACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAAT 215 ||| |||||| || |||||||||| ||||||||| |||||| ||| ||| || ||||||| Sbjct 77 GACAGATAGGAACAGAACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTTAAT 18 Query 216 GGGCGAACAGCCCAACC 232 ||||||||||| |||| Sbjct 17 AGGCGAACAGCCTAACC 1 >seq112540 Length=73 Score = 87.8 bits (96), Expect = 3e-15 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 156 GACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAAT 215 ||| |||||| ||||||||||||| ||||||||| |||||| ||| ||| || ||||||| Sbjct 3 GACAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTTAAT 62 Query 216 GGGCGAACAGC 226 |||||||||| Sbjct 63 AGGCGAACAGC 73 >seq30401 Length=127 Score = 84.2 bits (92), Expect = 3e-14 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 192 ACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCC 251 ||||| ||| ||| || ||||||| ||||||||||| ||||||||| ||| || |||| Sbjct 1 ACCCAACTCACGTACCACTTTAATAGGCGAACAGCCTAACCCTTGGAACCGCCTGCAGCT 60 Query 252 CCAGGATGAGACGAGCCGACATCG 275 ||| |||| || ||| |||||||| Sbjct 61 CCATGATGTGATGAGTCGACATCG 84 >seq156791 Length=127 Score = 82.4 bits (90), Expect = 1e-13 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 193 CCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCC 252 |||| ||| ||| || ||||||| ||||||||||| ||||||||| ||| || |||| | Sbjct 1 CCCAACTCACGTACCACTTTAATAGGCGAACAGCCTAACCCTTGGAACCGCCTGCAGCTC 60 Query 253 CAGGATGAGACGAGCCGACATCG 275 ||| ||| || ||| |||||||| Sbjct 61 CAGTATGTGATGAGTCGACATCG 83 >seq118609 Length=65 Score = 82.4 bits (90), Expect = 1e-13 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 170 GAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCA 229 |||||||||| ||||||||| |||||| ||| ||| || ||||||| ||||||||||| | Sbjct 1 GAACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTTAATAGGCGAACAGCCTA 60 Query 230 ACCCT 234 ||||| Sbjct 61 ACCCT 65 >seq131616 Length=64 Score = 80.6 bits (88), Expect = 4e-13 Identities = 56/64 (88%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 168 CCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCC 227 |||||||||||| ||||||||| |||||| ||| ||| || ||||||| ||||||||||| Sbjct 1 CCGAACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTTAATAGGCGAACAGCC 60 Query 228 CAAC 231 ||| Sbjct 61 TAAC 64 >seq955 Length=64 Score = 78.8 bits (86), Expect = 1e-12 Identities = 55/63 (87%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 168 CCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCC 227 |||||||||||| ||||||||| |||||| ||| ||| || ||||||| ||||||||||| Sbjct 63 CCGAACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTTAATAGGCGAACAGCC 4 Query 228 CAA 230 || Sbjct 3 TAA 1 >seq138424 Length=69 Score = 77.0 bits (84), Expect = 5e-12 Identities = 57/67 (85%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 209 CTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCC 268 ||||||| ||||||||||| ||||||||| ||| || |||| |||||||| || ||| | Sbjct 68 CTTTAATAGGCGAACAGCCTAACCCTTGGAACCGCCTGCAGCTCCAGGATGTGATGAGTC 9 Query 269 GACATCG 275 ||||||| Sbjct 8 GACATCG 2 >seq167054 Length=65 Score = 75.2 bits (82), Expect = 2e-11 Identities = 53/61 (87%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 181 CGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGAC 240 ||||||||| |||||| ||| ||| || ||||||| ||||||||||| ||||||||| || Sbjct 63 CGACGTTCTAAACCCAACTCACGTACCACTTTAATAGGCGAACAGCCTAACCCTTGGAAC 4 Query 241 C 241 | Sbjct 3 C 3 >seq166504 Length=64 Score = 75.2 bits (82), Expect = 2e-11 Identities = 53/61 (87%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 181 CGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGAC 240 ||||||||| |||||| ||| ||| || ||||||| ||||||||||| ||||||||| || Sbjct 3 CGACGTTCTAAACCCAACTCACGTACCACTTTAATAGGCGAACAGCCTAACCCTTGGAAC 62 Query 241 C 241 | Sbjct 63 C 63 >seq23748 Length=64 Score = 75.2 bits (82), Expect = 2e-11 Identities = 53/61 (87%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 181 CGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGAC 240 ||||||||| |||||| ||| ||| || ||||||| ||||||||||| ||||||||| || Sbjct 63 CGACGTTCTAAACCCAACTCACGTACCACTTTAATAGGCGAACAGCCTAACCCTTGGAAC 4 Query 241 C 241 | Sbjct 3 C 3 >seq134714 Length=64 Score = 73.4 bits (80), Expect = 6e-11 Identities = 52/60 (87%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 156 GACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAAT 215 ||| |||||| ||||||||||||| ||||||||| |||||| ||| ||| || ||||||| Sbjct 61 GACAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTTAAT 2 >seq73251 Length=127 Score = 73.4 bits (80), Expect = 6e-11 Identities = 58/70 (83%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 206 CCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGA 265 || ||||||| ||||||||||| ||||||||| ||| || |||| |||||||| || || Sbjct 1 CCACTTTAATAGGCGAACAGCCTAACCCTTGGAACCGCCTGCAGCTCCAGGATGTGATGA 60 Query 266 GCCGACATCG 275 | | |||||| Sbjct 61 GTCTACATCG 70 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 779122698128