Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000826485.1_202015-01- 07] 221,748 sequences; 115,049,889 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq90229 95.1 3e-17 seq62041 95.1 3e-17 seq37706 89.7 1e-15 seq71320 86.0 2e-14 seq21122 86.0 2e-14 seq25567 84.2 5e-14 seq106301 78.8 2e-12 seq96594 77.0 8e-12 >seq90229 Length=127 Score = 95.1 bits (104), Expect = 3e-17 Identities = 94/118 (80%), Gaps = 3/118 (3%) Strand=Plus/Plus Query 47 ATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTC-TGGAC 105 |||| |||| |||||||||| ||||||| ||||||||||| | ||| || | || | Sbjct 8 ATCAAGCTTTCGCCCATTGTCAAATATTCTCCACTGCTGCC-CTTTTAGAAGACTTGTGC 66 Query 106 CGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCT 163 ||| | ||||| ||| |||||||| |||| |||||| |||||||| | ||||||| || Sbjct 67 CGT-TTTCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCT 123 >seq62041 Length=127 Score = 95.1 bits (104), Expect = 3e-17 Identities = 94/118 (80%), Gaps = 3/118 (3%) Strand=Plus/Plus Query 47 ATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTC-TGGAC 105 |||| |||| |||||||||| ||||||| ||||||||||| | ||| || | | | | Sbjct 9 ATCAAGCTTTCGCCCATTGTCAAATATTCTCCACTGCTGCC-CTTTTAGAAGACTTTGGC 67 Query 106 CGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCT 163 ||| | ||||| ||| |||||||| |||| |||||| |||||||| | ||||||| || Sbjct 68 CGT-TTTCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCT 124 >seq37706 Length=127 Score = 89.7 bits (98), Expect = 1e-15 Identities = 85/105 (81%), Gaps = 3/105 (3%) Strand=Plus/Minus Query 47 ATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTC-TGGAC 105 |||| |||| |||||||||| ||||||| ||||||||||| | ||| || | ||| | Sbjct 108 ATCAAGCTTTCGCCCATTGTCAAATATTCTCCACTGCTGCC-CTTCTAGAAGACTTGGGC 50 Query 106 CGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTA 150 ||| | ||||| ||| |||||||| |||| |||||| |||||||| Sbjct 49 CGT-TTTCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTA 6 >seq71320 Length=127 Score = 86.0 bits (94), Expect = 2e-14 Identities = 86/108 (80%), Gaps = 3/108 (3%) Strand=Plus/Minus Query 57 CGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTC-TGGACCGTGTCTCAG 115 |||||||||| ||||||| ||||||||||| | ||| || | ||| |||| | |||| Sbjct 125 CGCCCATTGTCAAATATTCTCCACTGCTGCC-CTTTTAGAAGACTTGGGCCGT-TTTCAG 68 Query 116 TTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCT 163 | | | |||||||| |||| |||||| |||||||| | ||||||| || Sbjct 67 TCCAAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCT 20 >seq21122 Length=127 Score = 86.0 bits (94), Expect = 2e-14 Identities = 88/111 (79%), Gaps = 3/111 (3%) Strand=Plus/Minus Query 54 TTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTC-TGGACCGTGTCT 112 || |||||||||| ||||||| ||||||||||| | ||| || | ||| |||| | | Sbjct 127 TTTCGCCCATTGTCAAATATTCTCCACTGCTGCC-CTTTTAGAAGACTTGGGCCGT-TTT 70 Query 113 CAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCT 163 |||| || |||||||| |||| |||||| |||||||| | ||||||| || Sbjct 69 CAGTCACAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCT 19 >seq25567 Length=127 Score = 84.2 bits (92), Expect = 5e-14 Identities = 84/105 (80%), Gaps = 3/105 (3%) Strand=Plus/Plus Query 47 ATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTC-TGGAC 105 |||| |||| |||||||||| ||||||| ||||||||||| ||| || | ||| | Sbjct 23 ATCAAGCTTTCGCCCATTGTCAAATATTCTCCACTGCTGCC-ATTTTAGAAGACTTGGGC 81 Query 106 CGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTA 150 ||| | ||||| ||| |||||||| |||| |||||| |||||||| Sbjct 82 CGT-TTTCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTA 125 >seq106301 Length=127 Score = 78.8 bits (86), Expect = 2e-12 Identities = 82/104 (79%), Gaps = 3/104 (3%) Strand=Plus/Plus Query 61 CATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTC-TGGACCGTGTCTCAGTTCC 119 |||||| ||||||| ||||||||||| | ||| || | ||| |||| | ||||| || Sbjct 1 CATTGTCAAATATTCTCCACTGCTGCC-CTTTTAGAAGACTTGGGCCGT-TTTCAGTCCC 58 Query 120 AGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCT 163 | ||| |||| |||| |||||| |||||||| | ||||||| || Sbjct 59 AATGTTGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCT 102 >seq96594 Length=127 Score = 77.0 bits (84), Expect = 8e-12 Identities = 81/103 (79%), Gaps = 3/103 (3%) Strand=Plus/Plus Query 62 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTC-TGGACCGTGTCTCAGTTCCA 120 ||||| ||||||| ||||||||||| | ||| || | ||| |||| | ||||| ||| Sbjct 1 ATTGTCAAATATTCTCCACTGCTGCC-CTTTTAGAAGACTTGGGCCGT-TTTCAGTCCCA 58 Query 121 GTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCT 163 |||| ||| |||| |||||| |||||||| | ||||||| || Sbjct 59 ATGTGTCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCT 101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1219689352448