Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000826485.1_202015-01- 07] 221,748 sequences; 115,049,889 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq3494 131 3e-28 seq88272 125 1e-26 seq142241 120 6e-25 seq107001 105 1e-20 seq122758 89.7 1e-15 seq165576 86.0 1e-14 seq218478 84.2 4e-14 seq97933 84.2 4e-14 seq2377 78.8 2e-12 seq147389 77.0 6e-12 >seq3494 Length=132 Score = 131 bits (144), Expect = 3e-28 Identities = 78/82 (95%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 103 GGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGC 162 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 110 GGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGC 51 Query 163 TACACTGACAGAGCCAACGAGT 184 |||||||| | ||||||||| Sbjct 50 TACACTGATTAATCCAACGAGT 29 >seq88272 Length=84 Score = 125 bits (138), Expect = 1e-26 Identities = 78/84 (93%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 238 GGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCA 297 ||||||| ||||| |||||||| ||||||||||||||| ||||||||||||| ||||||| Sbjct 84 GGATAGATCATTGTAATTATTGATCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCA 25 Query 298 GCACGCGTTGATTACGTCCCTGCC 321 || ||||||||||||||||||||| Sbjct 24 GCTCGCGTTGATTACGTCCCTGCC 1 >seq142241 Length=127 Score = 120 bits (132), Expect = 6e-25 Identities = 92/109 (84%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||||| |||||||||| ||| | |||||||| ||||||| ||||| Sbjct 18 CCTGGGCCGATAGGTCCGGGTAATCTTTGCAAATTTAATCGTGCTGTGGATAGATCATTG 77 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGC 299 |||||||| ||||||||||||||| ||||||||||||| ||||||||| Sbjct 78 TAATTATTGATCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGC 126 >seq107001 Length=127 Score = 105 bits (116), Expect = 1e-20 Identities = 64/68 (94%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 261 TCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGC 320 ||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||| Sbjct 125 TCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGATTACGTCCCTGC 66 Query 321 CCTTTGTA 328 | |||||| Sbjct 65 CATTTGTA 58 >seq122758 Length=99 Score = 89.7 bits (98), Expect = 1e-15 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||||| |||||||||| ||| | |||||||||||||||| ||||| Sbjct 16 CCTGGGCCGATAGGTCCGGGTAATCTTTGCAAATTTAATCGTGCTGGGGATAGATCATTG 75 Query 251 CAATTATTGCTCTTCAACGAGGAA 274 |||||||| |||||||||||||| Sbjct 76 TAATTATTGATCTTCAACGAGGAA 99 >seq165576 Length=127 Score = 86.0 bits (94), Expect = 1e-14 Identities = 50/52 (96%), Gaps = 0/52 (0%) Strand=Plus/Minus Query 277 CCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||||||||||| ||||||||| |||||||||||||||||||||||||||| Sbjct 125 CCTAGTAAGCGCGAGTCATCAGCTCGCGTTGATTACGTCCCTGCCCTTTGTA 74 >seq218478 Length=47695 Score = 84.2 bits (92), Expect = 4e-14 Identities = 67/78 (86%), Gaps = 2/78 (3%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTA-TCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 |||| ||||||||||| | |||| |||| |||||||||||||||||||||||||| Sbjct 6851 GCTTATTAGAGGGACTGCTACGCTCCTAGCCAGCGGAAGTTTGAGGCAATAACAGGTCTG 6792 Query 129 TGATGCCCTTAGATGTTC 146 ||||||||||||||||| Sbjct 6791 GGATGCCCTTAGATGTTC 6774 >seq97933 Length=105 Score = 84.2 bits (92), Expect = 4e-14 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||||| ||| |||||| ||| | |||||||||||||||| ||||| Sbjct 22 CCTGGGCCGATAGGTCCGGGGAATCTTTGCAAATTTAATCGTGCTGGGGATAGATCATTG 81 Query 251 CAATTATTGCTCTTCAACGAGGAA 274 |||||||| |||||||||||||| Sbjct 82 TAATTATTGATCTTCAACGAGGAA 105 >seq2377 Length=127 Score = 78.8 bits (86), Expect = 2e-12 Identities = 64/75 (85%), Gaps = 2/75 (3%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCG-GCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 ||||||||||| |||| | || | |||| |||||||||||||||||||||||||| Sbjct 75 GCTTCTTAGAGTGACTGCTGCGCGCCTAGCCAGCGGAAGTTTGAGGCAATAACAGGTCTG 16 Query 129 TGATGCCCTTAGATG 143 ||||||||||||||| Sbjct 15 TGATGCCCTTAGATG 1 >seq147389 Length=127 Score = 77.0 bits (84), Expect = 6e-12 Identities = 63/74 (85%), Gaps = 2/74 (3%) Strand=Plus/Plus Query 71 GCTTCTTAGAGGGACTATCG-GCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 |||||||||| ||||| | || | |||| |||||||||||||||||||||||||| Sbjct 54 GCTTCTTAGATGGACTGCTGCGCGCCTAGCCAGCGGAAGTTTGAGGCAATAACAGGTCTG 113 Query 129 TGATGCCCTTAGAT 142 |||||||||||||| Sbjct 114 TGATGCCCTTAGAT 127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 945099602944