Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000826485.1_202015-01- 07] 221,748 sequences; 115,049,889 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq80464 98.7 2e-18 seq53071 87.8 3e-15 seq97648 86.0 1e-14 seq150049 75.2 2e-11 >seq80464 Length=127 Score = 98.7 bits (108), Expect = 2e-18 Identities = 96/121 (79%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||| | || |||||| |||||||| ||| | || | || | |||| Sbjct 6 GTACGAGAGGAACAGTCGA-TTCAGA-TAATTGGTATTTTCCCTTGGCCGAAAGGCCAGT 63 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||||| |||||||||||||||||||||||| |||||||| ||| | Sbjct 64 TGGGAGAAGCTACCATCTGTAGGATTATGGCTGAACGCCTCTAAGCCAGAATCCGTGCTA 123 Query 121 G 121 | Sbjct 124 G 124 >seq53071 Length=127 Score = 87.8 bits (96), Expect = 3e-15 Identities = 84/105 (80%), Gaps = 2/105 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||| | || |||||| |||||||| ||| | || | || | |||| Sbjct 104 GTACGAGAGGAACAGTCGA-TTCAGA-TAATTGGTATTTTCCATTGGCCGAAAGGCCAGT 47 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAG 105 | | |||||||||||||| |||||||||||||||||||||||| Sbjct 46 GGGGAGAAGCTACCATCTGTAGGATTATGGCTGAACGCCTCTAAG 2 >seq97648 Length=127 Score = 86.0 bits (94), Expect = 1e-14 Identities = 81/102 (79%), Gaps = 1/102 (1%) Strand=Plus/Plus Query 20 ATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTG 79 ||||||| |||||||| ||| | || | || | ||||| | |||||||||||||| Sbjct 3 ATTCAGA-TAATTGGTATTTTCCCTTGGCCGAAAGGCCAGTGGGGAGAAGCTACCATCTG 61 Query 80 CTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAG 121 ||||||||||||||||||||||| |||||||| ||| || Sbjct 62 TATGATTATGGCTGAACGCCTCTAAGCCAGAATCCGTGCTAG 103 >seq150049 Length=88 Score = 75.2 bits (82), Expect = 2e-11 Identities = 69/86 (80%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 20 ATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTG 79 ||||||| |||||||| ||| | || | || | ||||| | |||||||||||||| Sbjct 86 ATTCAGA-TAATTGGTATTTTCCCTTGGCCGAAAGGCCAGTGGGGAGAAGCTACCATCTG 28 Query 80 CTGGATTATGGCTGAACGCCTCTAAG 105 |||||||||||||||||||||||| Sbjct 27 TAGGATTATGGCTGAACGCCTCTAAG 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 817440207872