Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000826485.1_202015-01- 07] 221,748 sequences; 115,049,889 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq3578 188 2e-45 seq55606 178 4e-42 seq65732 165 2e-38 seq156040 163 9e-38 seq72615 163 9e-38 seq38697 163 9e-38 seq29202 163 9e-38 seq108464 161 3e-37 seq52656 154 4e-35 seq12510 154 4e-35 seq5727 132 1e-28 seq23717 107 6e-21 seq163892 104 7e-20 seq93986 77.0 1e-11 seq61426 77.0 1e-11 seq150482 75.2 3e-11 >seq3578 Length=127 Score = 188 bits (208), Expect = 2e-45 Identities = 118/127 (93%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 69 CGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGC 128 |||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||| Sbjct 127 CGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGAAGTGGTAGCCATTTCTCAGGC 68 Query 129 TCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTA 188 ||| ||||||||||||||||||||||| |||||||||||| ||||||||||||| ||| Sbjct 67 TCCATCTCCGGAATCGAACCCTAATTCTCCGTTACCCGTTACGACCATGGTAGGCCTCTA 8 Query 189 TCCTACC 195 ||||||| Sbjct 7 TCCTACC 1 >seq55606 Length=118 Score = 178 bits (196), Expect = 4e-42 Identities = 110/118 (93%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 78 GTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCC 137 ||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||| Sbjct 118 GTAATTTGCGCGCCTGCTGCCTTCCTTAGAAGTGGTAGCCATTTCTCAGGCTCCCTCTCC 59 Query 138 GGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACC 195 |||||||||||||||||| |||||||||||| ||||||||||||| |||||||||| Sbjct 58 GGAATCGAACCCTAATTCTCCGTTACCCGTTACGACCATGGTAGGCCTCTATCCTACC 1 >seq65732 Length=127 Score = 165 bits (182), Expect = 2e-38 Identities = 105/113 (93%), Gaps = 1/113 (1%) Strand=Plus/Plus Query 29 GAGC-CCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCG 87 |||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||| Sbjct 15 GAGCGCCTGTATTGTTATTTATTGTCACTACCTCCCCGTGTCGGGATTGTGTAATTTGCG 74 Query 88 CGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGA 140 ||||||||||||||||| || ||||||||| |||||||||||||||||||||| Sbjct 75 CGCCTGCTGCCTTCCTTAGAAGTGGTAGCCATTTCTCAGGCTCCCTCTCCGGA 127 >seq156040 Length=127 Score = 163 bits (180), Expect = 9e-38 Identities = 114/127 (90%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 9 TCCAATTACAAGACCCAAAA-GAGC-CCTGTATCAGTATTTATTGTCACTACCTCCCCGT 66 |||||||||||||| | | |||| ||||||| |||||||||||||||||||||||| Sbjct 1 TCCAATTACAAGACTCTTATCGAGCGCCTGTATTGTTATTTATTGTCACTACCTCCCCGT 60 Query 67 GTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAG 126 ||| |||||||||||||||||||||||||||||||||| || ||||||||| |||||||| Sbjct 61 GTCTGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGAAGTGGTAGCCATTTCTCAG 120 Query 127 GCTCCCT 133 ||||||| Sbjct 121 GCTCCCT 127 >seq72615 Length=162 Score = 163 bits (180), Expect = 9e-38 Identities = 135/162 (83%), Gaps = 12/162 (7%) Strand=Plus/Minus Query 133 TCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCT 192 ||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||| Sbjct 162 TCTCCGGAATCGAACCCTAATTCTCCGTTACCCGTTACGACCATGGTAGGCCTCTATCCT 103 Query 193 ACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCG---GCTCAAGG---- 245 |||||||||||||||||||||||||||||||||||| | |||||| | ||||| Sbjct 102 ACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAATCGTCGCCGTCCCCACAAGGAGGA 43 Query 246 ---CCATGCGATTCGTTA-AGTTATTATGAATCACCAAGGAG 283 ||||||| || | ||||| ||||||||||| ||||| Sbjct 42 CATGAATGCGATCCGAAAGAGTTACTATGAATCACC-AGGAG 2 >seq38697 Length=127 Score = 163 bits (180), Expect = 9e-38 Identities = 114/127 (90%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACCCAAAA-GAGC-CCTGTATCAGTATTTATTGTCACTACCT 60 |||||||||||||||||||| | | |||| ||||||| |||||||||||||||||| Sbjct 127 ACTCATTCCAATTACAAGACTCTTATCGAGCGCCTGTATTGTTATTTATTGTCACTACCT 68 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||| |||||||||||||||||||||||||||||||||||||||| || ||||||||| || Sbjct 67 CCCAGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGAAGTGGTAGCCATT 8 Query 121 TCTCAGG 127 ||||||| Sbjct 7 TCTCAGG 1 >seq29202 Length=127 Score = 163 bits (180), Expect = 9e-38 Identities = 114/127 (90%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 2 TACTCATTCCAATTACAAGACCCAAAA-GAGC-CCTGTATCAGTATTTATTGTCACTACC 59 ||||||||||||||||||||| | | |||| ||||||| ||||||||||||||||| Sbjct 127 TACTCATTCCAATTACAAGACTCTTATCGAGCGCCTGTATTGTTATTTATTGTCACTACC 68 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 ||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||| | Sbjct 67 TCCACGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGAAGTGGTAGCCAT 8 Query 120 TTCTCAG 126 ||||||| Sbjct 7 TTCTCAG 1 >seq108464 Length=172 Score = 161 bits (178), Expect = 3e-37 Identities = 106/116 (91%), Gaps = 1/116 (1%) Strand=Plus/Plus Query 390 ACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATT-G 448 || ||||||||||| ||||||||||||||||||||| |||||| || | ||||| | | Sbjct 36 ACCATCAAATAAACTATAACTGATTTAATGAGCCATCCGCAGTCTCGCCGTATAAACAAG 95 Query 449 CTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 96 CTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 151 >seq52656 Length=127 Score = 154 bits (170), Expect = 4e-35 Identities = 109/122 (89%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAA-GAGC-CCTGTATCAGTATTTATTGTCACTAC 58 |||||||||||||||||||||| | | |||| ||||||| |||||||||||||| | Sbjct 122 GTACTCATTCCAATTACAAGACTCTTATCGAGCGCCTGTATTGTTATTTATTGTCACTGC 63 Query 59 CTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCG 118 |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 62 CTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGAAGTGGTAGCCA 3 Query 119 TT 120 || Sbjct 2 TT 1 >seq12510 Length=127 Score = 154 bits (170), Expect = 4e-35 Identities = 109/122 (89%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAA-GAGC-CCTGTATCAGTATTTATTGTCACTAC 58 |||||||||||||||||||||| | | |||| ||||||| |||||||||||||| | Sbjct 122 GTACTCATTCCAATTACAAGACTCTTATCGAGCGCCTGTATTGTTATTTATTGTCACTCC 63 Query 59 CTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCG 118 |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 62 CTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGAAGTGGTAGCCA 3 Query 119 TT 120 || Sbjct 2 TT 1 >seq5727 Length=107 Score = 132 bits (146), Expect = 1e-28 Identities = 86/93 (92%), Gaps = 1/93 (1%) Strand=Plus/Plus Query 29 GAGC-CCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCG 87 |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 15 GAGCGCCTGTATTGTTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCG 74 Query 88 CGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||||||||||| || ||||||||| || Sbjct 75 CGCCTGCTGCCTTCCTTAGAAGTGGTAGCCATT 107 >seq23717 Length=67 Score = 107 bits (118), Expect = 6e-21 Identities = 64/67 (96%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 65 GTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTC 124 |||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||| Sbjct 67 GTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGAAGTGGTAGCCATTTCTC 8 Query 125 AGGCTCC 131 ||||||| Sbjct 7 AGGCTCC 1 >seq163892 Length=65 Score = 104 bits (114), Expect = 7e-20 Identities = 62/65 (95%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 69 CGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGC 128 |||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||| Sbjct 65 CGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGAAGTGGTAGCCATTTCTCAGGC 6 Query 129 TCCCT 133 ||||| Sbjct 5 TCCCT 1 >seq93986 Length=319 Score = 77.0 bits (84), Expect = 1e-11 Identities = 42/42 (100%), Gaps = 0/42 (0%) Strand=Plus/Plus Query 463 TGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 42 >seq61426 Length=183 Score = 77.0 bits (84), Expect = 1e-11 Identities = 42/42 (100%), Gaps = 0/42 (0%) Strand=Plus/Minus Query 463 TGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||||||||||||||| Sbjct 183 TGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 142 >seq150482 Length=127 Score = 75.2 bits (82), Expect = 3e-11 Identities = 67/87 (77%), Gaps = 13/87 (15%) Strand=Plus/Minus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGT-------------AAGGTA 390 ||||||||||||||||||||||| ||||||||||| |||| ||| | Sbjct 87 GCATGTATTAGCTCTAGAATTACAACGGTTATCCAAGTAGGTAAAAAAAGACAAAAGAGA 28 Query 391 CTATCAAATAAACGATAACTGATTTAA 417 | ||||||||||| ||||||||||||| Sbjct 27 CCATCAAATAAACTATAACTGATTTAA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1507050718208