Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20comandoni_20[genbank_20GCA_5F002025285.1_202017-03- 13] 57,594 sequences; 86,214,659 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq45361 188 1e-45 seq30935 188 1e-45 seq18978 188 1e-45 seq17368 188 1e-45 seq951 183 5e-44 >seq45361 Length=527 Score = 188 bits (208), Expect = 1e-45 Identities = 129/142 (91%), Gaps = 4/142 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| | Sbjct 253 GTACAAAGGGCAGGGACGTAATCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 310 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTT--CAAAGAT 118 ||||||||||| ||| |||| |||||||||||||||| |||||| |||||| ||||||| Sbjct 311 CTCGTTGAAGATCAATAATTACAATGATCTATCCCCAGCACGATTAAATTTCACAAAGAT 370 Query 119 TACCCGGACCTGTCGGCCAAGG 140 ||||| ||||| |||||| ||| Sbjct 371 TACCCAGACCTATCGGCCCAGG 392 >seq30935 Length=632 Score = 188 bits (208), Expect = 1e-45 Identities = 129/142 (91%), Gaps = 4/142 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| | Sbjct 135 GTACAAAGGGCAGGGACGTAATCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 192 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTT--CAAAGAT 118 ||||||||||| ||| |||| |||||||||||||||| |||||| |||||| ||||||| Sbjct 193 CTCGTTGAAGATCAATAATTACAATGATCTATCCCCAGCACGATTAAATTTCACAAAGAT 252 Query 119 TACCCGGACCTGTCGGCCAAGG 140 ||||| ||||| |||||| ||| Sbjct 253 TACCCAGACCTATCGGCCCAGG 274 Score = 143 bits (158), Expect = 4e-32 Identities = 82/84 (98%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 147 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 206 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 368 ACTCGTTGAATTAATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 427 Query 207 CCTGTTATTGCCTCAAACTTCCGT 230 |||||||||||||||||||||||| Sbjct 428 CCTGTTATTGCCTCAAACTTCCGT 451 >seq18978 Length=4319 Score = 188 bits (208), Expect = 1e-45 Identities = 129/142 (91%), Gaps = 4/142 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| | Sbjct 3550 GTACAAAGGGCAGGGACGTAATCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 3607 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTT--CAAAGAT 118 ||||||||||| ||| |||| |||||||||||||||| |||||| |||||| ||||||| Sbjct 3608 CTCGTTGAAGATCAATAATTACAATGATCTATCCCCAGCACGATTAAATTTCACAAAGAT 3667 Query 119 TACCCGGACCTGTCGGCCAAGG 140 ||||| ||||| |||||| ||| Sbjct 3668 TACCCAGACCTATCGGCCCAGG 3689 Score = 143 bits (158), Expect = 4e-32 Identities = 82/84 (98%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 147 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 206 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3781 ACTCGTTGAATTAATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 3840 Query 207 CCTGTTATTGCCTCAAACTTCCGT 230 |||||||||||||||||||||||| Sbjct 3841 CCTGTTATTGCCTCAAACTTCCGT 3864 >seq17368 Length=2821 Score = 188 bits (208), Expect = 1e-45 Identities = 129/142 (91%), Gaps = 4/142 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| | Sbjct 505 GTACAAAGGGCAGGGACGTAATCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 448 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTT--CAAAGAT 118 ||||||||||| ||| |||| |||||||||||||||| |||||| |||||| ||||||| Sbjct 447 CTCGTTGAAGATCAATAATTACAATGATCTATCCCCAGCACGATTAAATTTCACAAAGAT 388 Query 119 TACCCGGACCTGTCGGCCAAGG 140 ||||| ||||| |||||| ||| Sbjct 387 TACCCAGACCTATCGGCCCAGG 366 Score = 143 bits (158), Expect = 4e-32 Identities = 82/84 (98%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 147 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 206 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 274 ACTCGTTGAATTAATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 215 Query 207 CCTGTTATTGCCTCAAACTTCCGT 230 |||||||||||||||||||||||| Sbjct 214 CCTGTTATTGCCTCAAACTTCCGT 191 >seq951 Length=9632 Score = 183 bits (202), Expect = 5e-44 Identities = 128/142 (90%), Gaps = 4/142 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| | Sbjct 9628 GTACAAAGGGCAGGGACGTAATCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 9571 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTT--CAAAGAT 118 ||||||||||| ||| || | |||||||||||||||| |||||| |||||| ||||||| Sbjct 9570 CTCGTTGAAGATCAATAACTACAATGATCTATCCCCAGCACGATTAAATTTCACAAAGAT 9511 Query 119 TACCCGGACCTGTCGGCCAAGG 140 ||||| ||||| |||||| ||| Sbjct 9510 TACCCAGACCTATCGGCCCAGG 9489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751580427710