Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20comandoni_20[genbank_20GCA_5F002025285.1_202017-03- 13] 57,594 sequences; 86,214,659 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq45941 86.0 3e-15 seq43788 86.0 3e-15 seq40748 86.0 3e-15 seq39498 86.0 3e-15 seq36839 86.0 3e-15 >seq45941 Length=503 Score = 86.0 bits (94), Expect = 3e-15 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 51 AACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCG 110 ||| || ||| ||| || |||||||| ||||| |||||||||||||||||||||| |||| Sbjct 343 AACGTCTCCCAATCGCTGGTCGGCATGGTTTATGGTTAAGACTACGACGGTATCTAATCG 284 Query 111 TCTTCGA 117 ||||||| Sbjct 283 TCTTCGA 277 >seq43788 Length=831 Score = 86.0 bits (94), Expect = 3e-15 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 51 AACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCG 110 ||| || ||| ||| || |||||||| ||||| |||||||||||||||||||||| |||| Sbjct 644 AACGTCTCCCAATCGCTGGTCGGCATGGTTTATGGTTAAGACTACGACGGTATCTAATCG 585 Query 111 TCTTCGA 117 ||||||| Sbjct 584 TCTTCGA 578 >seq40748 Length=923 Score = 86.0 bits (94), Expect = 3e-15 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 51 AACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCG 110 ||| || ||| ||| || |||||||| ||||| |||||||||||||||||||||| |||| Sbjct 733 AACGTCTCCCAATCGCTGGTCGGCATGGTTTATGGTTAAGACTACGACGGTATCTAATCG 674 Query 111 TCTTCGA 117 ||||||| Sbjct 673 TCTTCGA 667 >seq39498 Length=967 Score = 86.0 bits (94), Expect = 3e-15 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 51 AACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCG 110 ||| || ||| ||| || |||||||| ||||| |||||||||||||||||||||| |||| Sbjct 173 AACGTCTCCCAATCGCTGGTCGGCATGGTTTATGGTTAAGACTACGACGGTATCTAATCG 232 Query 111 TCTTCGA 117 ||||||| Sbjct 233 TCTTCGA 239 >seq36839 Length=875 Score = 86.0 bits (94), Expect = 3e-15 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 51 AACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCG 110 ||| || ||| ||| || |||||||| ||||| |||||||||||||||||||||| |||| Sbjct 188 AACGTCTCCCAATCGCTGGTCGGCATGGTTTATGGTTAAGACTACGACGGTATCTAATCG 247 Query 111 TCTTCGA 117 ||||||| Sbjct 248 TCTTCGA 254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278249679660