Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20comandoni_20[genbank_20GCA_5F002025285.1_202017-03- 13] 57,594 sequences; 86,214,659 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq45941 172 1e-40 seq43788 172 1e-40 seq40748 172 1e-40 seq39498 172 1e-40 seq36839 172 1e-40 >seq45941 Length=503 Score = 172 bits (190), Expect = 1e-40 Identities = 126/145 (87%), Gaps = 1/145 (1%) Strand=Plus/Plus Query 174 AGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGT 233 |||||| ||||||||||||||||||||| ||||| | | |||| ||||||||||||| Sbjct 132 AGGACCAGGGTAATGATTAATAGGGATAGTTGGGGGCATTAATATTTAATTGTCAGAGGT 191 Query 234 GAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCA 293 ||||||||||||||||| |||| ||||| |||||||||| | ||||||||||||||| Sbjct 192 GAAATTCTTGGATTTATGAAAGATTAACTTCTGCGAAAGCATCTGCCAAGGATGTTTTCA 251 Query 294 TTAATCAGTGAACGAAAGTTAGGGG 318 ||||||| |||||||||||||||| Sbjct 252 TTAATCA-AGAACGAAAGTTAGGGG 275 >seq43788 Length=831 Score = 172 bits (190), Expect = 1e-40 Identities = 126/145 (87%), Gaps = 1/145 (1%) Strand=Plus/Plus Query 174 AGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGT 233 |||||| ||||||||||||||||||||| ||||| | | |||| ||||||||||||| Sbjct 433 AGGACCAGGGTAATGATTAATAGGGATAGTTGGGGGCATTAATATTTAATTGTCAGAGGT 492 Query 234 GAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCA 293 ||||||||||||||||| |||| ||||| |||||||||| | ||||||||||||||| Sbjct 493 GAAATTCTTGGATTTATGAAAGATTAACTTCTGCGAAAGCATCTGCCAAGGATGTTTTCA 552 Query 294 TTAATCAGTGAACGAAAGTTAGGGG 318 ||||||| |||||||||||||||| Sbjct 553 TTAATCA-AGAACGAAAGTTAGGGG 576 >seq40748 Length=923 Score = 172 bits (190), Expect = 1e-40 Identities = 126/145 (87%), Gaps = 1/145 (1%) Strand=Plus/Plus Query 174 AGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGT 233 |||||| ||||||||||||||||||||| ||||| | | |||| ||||||||||||| Sbjct 522 AGGACCAGGGTAATGATTAATAGGGATAGTTGGGGGCATTAATATTTAATTGTCAGAGGT 581 Query 234 GAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCA 293 ||||||||||||||||| |||| ||||| |||||||||| | ||||||||||||||| Sbjct 582 GAAATTCTTGGATTTATGAAAGATTAACTTCTGCGAAAGCATCTGCCAAGGATGTTTTCA 641 Query 294 TTAATCAGTGAACGAAAGTTAGGGG 318 ||||||| |||||||||||||||| Sbjct 642 TTAATCA-AGAACGAAAGTTAGGGG 665 Score = 78.8 bits (86), Expect = 2e-12 Identities = 77/99 (78%), Gaps = 13/99 (13%) Strand=Plus/Plus Query 63 GAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC-------CTT---- 111 || |||| | ||||| |||||||||||||||||||||||||||| ||| Sbjct 343 GACCCAGATCGTTTACCGTGAAAAAATTAGAGTGTTCAAAGCAGGCAGATATTCTTTTAC 402 Query 112 TGC--TCGAATACATTAGCATGGAATAATAGAATAGGAC 148 ||| ||||||||||||||||| ||||| ||||||||| Sbjct 403 TGCCACCGAATACATTAGCATGGGATAATGGAATAGGAC 441 >seq39498 Length=967 Score = 172 bits (190), Expect = 1e-40 Identities = 126/145 (87%), Gaps = 1/145 (1%) Strand=Plus/Minus Query 174 AGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGT 233 |||||| ||||||||||||||||||||| ||||| | | |||| ||||||||||||| Sbjct 384 AGGACCAGGGTAATGATTAATAGGGATAGTTGGGGGCATTAATATTTAATTGTCAGAGGT 325 Query 234 GAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCA 293 ||||||||||||||||| |||| ||||| |||||||||| | ||||||||||||||| Sbjct 324 GAAATTCTTGGATTTATGAAAGATTAACTTCTGCGAAAGCATCTGCCAAGGATGTTTTCA 265 Query 294 TTAATCAGTGAACGAAAGTTAGGGG 318 ||||||| |||||||||||||||| Sbjct 264 TTAATCA-AGAACGAAAGTTAGGGG 241 >seq36839 Length=875 Score = 172 bits (190), Expect = 1e-40 Identities = 126/145 (87%), Gaps = 1/145 (1%) Strand=Plus/Minus Query 174 AGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGT 233 |||||| ||||||||||||||||||||| ||||| | | |||| ||||||||||||| Sbjct 399 AGGACCAGGGTAATGATTAATAGGGATAGTTGGGGGCATTAATATTTAATTGTCAGAGGT 340 Query 234 GAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCA 293 ||||||||||||||||| |||| ||||| |||||||||| | ||||||||||||||| Sbjct 339 GAAATTCTTGGATTTATGAAAGATTAACTTCTGCGAAAGCATCTGCCAAGGATGTTTTCA 280 Query 294 TTAATCAGTGAACGAAAGTTAGGGG 318 ||||||| |||||||||||||||| Sbjct 279 TTAATCA-AGAACGAAAGTTAGGGG 256 Score = 78.8 bits (86), Expect = 2e-12 Identities = 77/99 (78%), Gaps = 13/99 (13%) Strand=Plus/Minus Query 63 GAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC-------CTT---- 111 || |||| | ||||| |||||||||||||||||||||||||||| ||| Sbjct 577 GACCCAGATCGTTTACCGTGAAAAAATTAGAGTGTTCAAAGCAGGCAGATATTCTTTTAC 518 Query 112 TGC--TCGAATACATTAGCATGGAATAATAGAATAGGAC 148 ||| ||||||||||||||||| ||||| ||||||||| Sbjct 517 TGCCACCGAATACATTAGCATGGGATAATGGAATAGGAC 479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914672899712