Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20comandoni_20[genbank_20GCA_5F002025285.1_202017-03- 13] 57,594 sequences; 86,214,659 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq18978 159 1e-36 seq6799 152 2e-34 seq44875 147 9e-33 seq44944 138 5e-30 seq17174 136 2e-29 seq12119 127 9e-27 seq26527 109 2e-21 seq37495 91.5 6e-16 seq17368 89.7 2e-15 seq9478 75.2 5e-11 >seq18978 Length=4319 Score = 159 bits (176), Expect = 1e-36 Identities = 221/314 (70%), Gaps = 39/314 (12%) Strand=Plus/Minus Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG-TCAAAC 466 ||||||||| |||||||||||||||||||||||| ||||||| ||||| |||||| Sbjct 679 CCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCGCGCGAGTGCCCGGGTGATCAAAC 620 Query 467 CCGTGCGCGTAATGAAAGTGAACGG-----------------AGGTGGGAA--------- 500 || ||||| | |||||| | | || | ||||||| Sbjct 619 CCCGGCGCGGAGTGAAAGCGGAGGGCTGCCTTGTGCAGCCTGAAGTGGGAAGCGCCTGCT 560 Query 501 CCCGTGAGGG-----------TGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTG 549 ||| | | || ||||||| | |||| | ||| | | | | || || | Sbjct 559 CCCTTCACGGGGGGCGGGAGCTGCACCACTGGCCGACCTGGATTTTCTTGAAAGG-TTCG 501 Query 550 AGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGC 609 || |||||| | ||||||||||||||||||| |||||||||| ||| ||| |||||| Sbjct 500 AGCAAGAGCGTGCCTGTTGGGACCCGAAAGATTGTGAACTATGGGTGACCAGGATGAAGC 441 Query 610 CAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTT 669 ||||||||||||||||||||| || |||| | ||| ||||||||||| ||||| | || Sbjct 440 CAGAGGAAACTCTGGTGGAGGTCCGAAGCGATACTGACGTGCAAATCGTTCGTCTGAGTT 381 Query 670 GGGTATAGGGGCGA 683 | ||||||||||| Sbjct 380 GCCTATAGGGGCGA 367 Score = 149 bits (164), Expect = 3e-33 Identities = 129/160 (81%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| |||| ||| ||||||| | | || |||||| Sbjct 1339 GAGTCGGGTTGTTTGGGAATGCAGCCCTAAGCGGGTGGTAAATCCCACCCAAGACTAAAT 1280 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 || || |||||||||||||| ||||||| |||| ||||| ||||||| |||||| || Sbjct 1279 ATCAGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGGTGAAAAGGACTTTGAAA 1220 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 ||||||| ||| || | |||||||||| ||||||||| Sbjct 1219 AGAGAGTCAAATAGTGCTTGAAATTGTTAGGAGGGAAGCG 1180 >seq6799 Length=7561 Score = 152 bits (168), Expect = 2e-34 Identities = 220/316 (70%), Gaps = 41/316 (13%) Strand=Plus/Plus Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG-TCAAAC 466 ||||||||| |||||||||||||||||||||||| ||||||| ||||| |||||| Sbjct 1351 CCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCGCGCGAGTGCCCGGGTGATCAAAC 1410 Query 467 CCGTGCGCGTAATGAAAGTGAACGG-----------------AGGTGGGAACC------- 502 || ||||| | |||||| | | || | ||||||| | Sbjct 1411 CCCGGCGCGGAGTGAAAGCGGAGGGCTGCCTCGTGCAGCCTGAAGTGGGAAGCGCCTGTT 1470 Query 503 --------CGTGAGGGTG-------CACCATCGACCGATCCTGATGTCTTCGGATGGATT 547 || | ||| | ||||| | |||| | ||| | | | | || || Sbjct 1471 TCCCTTCACGGGGGGGCGGGAGCCGCACCACTGGCCGACCTGGATTTTCTTGAAAGG-TT 1529 Query 548 TGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAA 607 ||| |||||| | ||||||||||||||||||| |||||||||| ||| ||| |||| Sbjct 1530 CGAGCAAGAGCGTGCCTGTTGGGACCCGAAAGATTGTGAACTATGGGTGACCAGGATGAA 1589 Query 608 GCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAAT 667 ||||||||||||||||||||||| || |||| | ||| ||||||||||| ||||| | Sbjct 1590 GCCAGAGGAAACTCTGGTGGAGGTCCGAAGCGATACTGACGTGCAAATCGTTCGTCTGAG 1649 Query 668 TTGGGTATAGGGGCGA 683 ||| ||||||||||| Sbjct 1650 TTGCCTATAGGGGCGA 1665 Score = 149 bits (164), Expect = 3e-33 Identities = 129/160 (81%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| |||| ||| ||||||| | | || |||||| Sbjct 695 GAGTCGGGTTGTTTGGGAATGCAGCCCTAAGCGGGTGGTAAATCCCACCCAAGACTAAAT 754 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 || || |||||||||||||| ||||||| |||| ||||| ||||||| |||||| || Sbjct 755 ATCAGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGGTGAAAAGGACTTTGAAA 814 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 ||||||| ||| || | |||||||||| ||||||||| Sbjct 815 AGAGAGTCAAATAGTGCTTGAAATTGTTAGGAGGGAAGCG 854 >seq44875 Length=650 Score = 147 bits (162), Expect = 9e-33 Identities = 217/313 (69%), Gaps = 41/313 (13%) Strand=Plus/Minus Query 411 GTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG-TCAAACCCG 469 |||||| |||||||||||||||||||||||| ||||||| ||||| |||||||| Sbjct 500 GTCTTGAAACACGGACCAAGGAGTCTAACATGCGCGCGAGTGCCCGGGTGATCAAACCCC 441 Query 470 TGCGCGTAATGAAAGTGAACGG-----------------AGGTGGGAACC---------- 502 ||||| | |||||| | | || | ||||||| | Sbjct 440 GGCGCGGAGTGAAAGCGGAGGGCTGCCTCGTGCAGCCTGAAGTGGGAAGCGCCTGTTTCC 381 Query 503 -----CGTGAGGGTG-------CACCATCGACCGATCCTGATGTCTTCGGATGGATTTGA 550 || | ||| | ||||| | |||| | ||| | | | | || || || Sbjct 380 CTTCACGGGGGGGCGGGAGCCGCACCACTGGCCGACCTGGATTTTCTTGAAAGG-TTCGA 322 Query 551 GTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCC 610 | |||||| | ||||||||||||||||||| |||||||||| ||| ||| ||||||| Sbjct 321 GCAAGAGCGTGCCTGTTGGGACCCGAAAGATTGTGAACTATGGGTGACCAGGATGAAGCC 262 Query 611 AGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTG 670 |||||||||||||||||||| || |||| | ||| ||||||||||| ||||| | ||| Sbjct 261 AGAGGAAACTCTGGTGGAGGTCCGAAGCGATACTGACGTGCAAATCGTTCGTCTGAGTTG 202 Query 671 GGTATAGGGGCGA 683 ||||||||||| Sbjct 201 CCTATAGGGGCGA 189 >seq44944 Length=718 Score = 138 bits (152), Expect = 5e-30 Identities = 128/160 (80%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| |||| ||| ||||||| | | || |||||| Sbjct 323 GAGTCGGGTTGTTTGGGAATGCAGCCCTAAGCGGGTGGTAAATCCCACCCAAGACTAAAT 264 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 || || |||||||||||||| ||||||| |||| ||||| ||||||| ||||| ||| Sbjct 263 ATCAGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGGTGAAAAGGACTTT-GAA 205 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||| | || || | |||||||||| ||||||||| Sbjct 204 AGAGAG-TCAATAGTGCTTGAAATTGTTAGGAGGGAAGCG 166 >seq17174 Length=1956 Score = 136 bits (150), Expect = 2e-29 Identities = 126/160 (79%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| |||| ||| ||||||| | || || |||||| Sbjct 1617 GAGTCGGGTTGTTTGGGAATGCAGCCCTAAGCGGGTGGTAAATCCCATCCAAGACTAAAT 1558 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 || | |||||| || |||| ||||||| |||| |||| ||||||| |||||| || Sbjct 1557 ATCAGTGAGAGACTGAGAGCGAACAAGTACCGTGAGGAAAAGGTGAAAAGGACTTTGAAA 1498 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 ||||||| ||| || | |||||||||| ||||||||| Sbjct 1497 AGAGAGTCAAATAGTGCTTGAAATTGTTAGGAGGGAAGCG 1458 >seq12119 Length=4736 Score = 127 bits (140), Expect = 9e-27 Identities = 99/118 (84%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 546 TTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTG 605 || ||| |||||| | ||||||||||||||||||| |||||||||| ||| ||| || Sbjct 936 TTCGAGCAAGAGCGTGCCTGTTGGGACCCGAAAGATTGTGAACTATGGGTGACCAGGATG 877 Query 606 AAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTC 663 ||||||||||||||||||||||||| || |||| | ||| ||||||||||| || || Sbjct 876 AAGCCAGAGGAAACTCTGGTGGAGGTCCGAAGCGATACTGACGTGCAAATCGTTCCTC 819 >seq26527 Length=815 Score = 109 bits (120), Expect = 2e-21 Identities = 178/262 (68%), Gaps = 41/262 (16%) Strand=Plus/Plus Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG-TCAAAC 466 ||||||||| |||||||||||||||||||||||| ||||||| ||||| |||||| Sbjct 555 CCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCGCGCGAGTGCCCGGGTGATCAAAC 614 Query 467 CCGTGCGCGTAATGAAAGTGAACGG-----------------AGGTGGGAACC------- 502 || ||||| | |||||| | | || | ||||||| | Sbjct 615 CCCGGCGCGGAGTGAAAGCGGAGGGCTGCCTCGTGCAGCCTGAAGTGGGAAGCGCCTGTT 674 Query 503 --------CGTGAGGGTG-------CACCATCGACCGATCCTGATGTCTTCGGATGGATT 547 || | ||| | ||||| | |||| | ||| | | | | || || Sbjct 675 TCCCTTCACGGGGGGGCGGGAGCCGCACCACTGGCCGACCTGGATTTTCTTGAAAGG-TT 733 Query 548 TGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAA 607 ||| |||||| | ||||||||||||||||||| |||||||||| ||| ||| |||| Sbjct 734 CGAGCAAGAGCGTGCCTGTTGGGACCCGAAAGATTGTGAACTATGGGTGACCAGGATGAA 793 Query 608 GCCAGAGGAAACTCTGGTGGAG 629 |||||||||||||||||||||| Sbjct 794 GCCAGAGGAAACTCTGGTGGAG 815 >seq37495 Length=904 Score = 91.5 bits (100), Expect = 6e-16 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| |||| ||| ||||||| | | || |||||| Sbjct 96 GAGTCGGGTTGTTTGGGAATGCAGCCCTAAGCGGGTGGTAAATCCCACCCAAGACTAAAT 37 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGA 134 || || |||||||||||||| ||||||| |||| Sbjct 36 ATCAGCGAGAGACCGATAGCGAACAAGTACCGTGA 2 >seq17368 Length=2821 Score = 89.7 bits (98), Expect = 2e-15 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| |||| ||| ||||||| | | || |||||| Sbjct 2733 GAGTCGGGTTGTTTGGGAATGCAGCCCTAAGCGGGTGGTAAATCCCACCCAAGACTAAAT 2792 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTA 128 || || |||||||||||||| ||||||| Sbjct 2793 ATCAGCGAGAGACCGATAGCGAACAAGTA 2821 >seq9478 Length=2784 Score = 75.2 bits (82), Expect = 5e-11 Identities = 64/78 (82%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGT-GTCAAAC 466 ||||||||| |||| ||||||||||||||||||| ||||||| |||| ||||||| Sbjct 1619 CCCGTCTTGAAACAAGGACCAAGGAGTCTAACATGCGCGCGAGTGCCCGGGTGGTCAAAC 1678 Query 467 CCGTGCGCGTAATGAAAG 484 || ||||| | |||||| Sbjct 1679 CCCGGCGCGGAGTGAAAG 1696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2078764608700