Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20comandoni_20[genbank_20GCA_5F002025285.1_202017-03- 13] 57,594 sequences; 86,214,659 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq26448 116 5e-24 seq1026 116 5e-24 seq28316 100 4e-19 >seq26448 Length=1245 Score = 116 bits (128), Expect = 5e-24 Identities = 174/242 (72%), Gaps = 14/242 (6%) Strand=Plus/Minus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||||| ||| | ||||||||||| ||||| || ||||| || |||| | |||||| Sbjct 599 TTATCTTTC-AGCACCGGGCAGGTGTCAGACCCTATACTTCATTTTACAAT-TTCGCAGA 542 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121 | |||||||||||| |||||||||||| ||||||||||| | ||| | || | | Sbjct 541 GTCCTGTGTTTTTAATAAACAGTCGCTACCCTCTATTCTGTTACACCTATATAAGAT-TA 483 Query 122 CACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAAT 181 | | ||| | || || ||||||||||||||||||| | |||||||||| | Sbjct 482 CTC--------CCATTA--GGTACTCCTTCTCCCGAAGTTACGGAGTTATTTTGCCGAGT 433 Query 182 TCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTT 241 ||||| | | ||| | | ||| ||||| ||| ||||| | | |||||| ||||| Sbjct 432 TCCTTCAATATTATTCTCTC-AACACCTTAATATACTCTATTTAAATACCTGTTGCGGTT 374 Query 242 TA 243 || Sbjct 373 TA 372 >seq1026 Length=8135 Score = 116 bits (128), Expect = 5e-24 Identities = 174/242 (72%), Gaps = 14/242 (6%) Strand=Plus/Plus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||||| ||| | ||||||||||| ||||| || ||||| || |||| | |||||| Sbjct 1104 TTATCTTTC-AGCACCGGGCAGGTGTCAGACCCTATACTTCATTTTACAAT-TTCGCAGA 1161 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121 | |||||||||||| |||||||||||| ||||||||||| | ||| | || | | Sbjct 1162 GTCCTGTGTTTTTAATAAACAGTCGCTACCCTCTATTCTGTTACACCTATATAAGAT-TA 1220 Query 122 CACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAAT 181 | | ||| | || || ||||||||||||||||||| | |||||||||| | Sbjct 1221 CTC--------CCATTA--GGTACTCCTTCTCCCGAAGTTACGGAGTTATTTTGCCGAGT 1270 Query 182 TCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTT 241 ||||| | | ||| | | ||| ||||| ||| ||||| | | |||||| ||||| Sbjct 1271 TCCTTCAATATTATTCTCTC-AACACCTTAATATACTCTATTTAAATACCTGTTGCGGTT 1329 Query 242 TA 243 || Sbjct 1330 TA 1331 >seq28316 Length=1685 Score = 100 bits (110), Expect = 4e-19 Identities = 174/245 (71%), Gaps = 16/245 (7%) Strand=Plus/Plus Query 2 TTATCCTTCCAT-CACCGGGCAGGCGTCAGTCCGTAT-ACATCGACTTACCGTCTTCGCA 59 |||| ||| || ||||||||||| ||||| || ||| || || |||| | |||||| Sbjct 224 TTATTCTTTCAGGCACCGGGCAGGTGTCAGACCCTATTACTTCATTTTACAAT-TTCGCA 282 Query 60 CGGACCT-GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCT 118 | ||| ||||||||| |||||||||||| ||||||||||| | ||| | || | Sbjct 283 GAGTCCTTGTGTTTTTAATAAACAGTCGCTACCCTCTATTCTGTTACACCTATATAAGAT 342 Query 119 CAACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCG 178 || | ||| | || || ||||||||||||||||||| | ||||||||| Sbjct 343 -TACTC--------CCATTA--GGTACTCCTTCTCCCGAAGTTACGGAGTTATTTTGCCG 391 Query 179 AATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCG 238 | |||||| | | ||| | | ||| ||||| ||| ||||| | | |||||| || Sbjct 392 AGTTCCTTCAATATTATTCTCTC-AACACCTTAATATACTCTATTTAAATACCTGTTGCG 450 Query 239 GTTTA 243 ||||| Sbjct 451 GTTTA 455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694012565162