Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20comandoni_20[genbank_20GCA_5F002025285.1_202017-03- 13] 57,594 sequences; 86,214,659 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq37554 104 7e-20 seq25939 104 7e-20 seq1027 104 7e-20 seq31115 93.3 1e-16 seq44233 91.5 4e-16 seq48827 89.7 2e-15 seq52607 82.4 2e-13 seq53214 78.8 3e-12 seq48961 78.8 3e-12 >seq37554 Length=691 Score = 104 bits (114), Expect = 7e-20 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 297 GGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACA 356 ||| || |||||||||| ||| || ||| ||||||||||||||| ||||||||| | Sbjct 520 GGAAGAAGTCAAATCATTATGGCCTATATAGATTGGGCTACACACGTACTACAATGGTAA 461 Query 357 ATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGG 416 ||||| | | | ||| | || | || ||| | ||| || || ||||||| Sbjct 460 TTACAATATGAAACAAAAATGTGAATTAGAGTAAAACATTAAAAATTAACCTTAGTTCGG 401 Query 417 ATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATG 476 ||| | |||| || |||| ||||||| ||||||||||||||||| | | || ||| Sbjct 400 ATTATTCTCTGTAAGTCGAGAGTATGAAGGCGGAATCGCTAGTAATCGCAAAATAGAATG 341 Query 477 CTACGGTGAATA 488 | ||||||||| Sbjct 340 TTGCGGTGAATA 329 >seq25939 Length=630 Score = 104 bits (114), Expect = 7e-20 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 297 GGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACA 356 ||| || |||||||||| ||| || ||| ||||||||||||||| ||||||||| | Sbjct 1 GGAAGAAGTCAAATCATTATGGCCTATATAGATTGGGCTACACACGTACTACAATGGTAA 60 Query 357 ATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGG 416 ||||| | | | ||| | || | || ||| | ||| || || ||||||| Sbjct 61 TTACAATATGAAACAAAAATGTGAATTAGAGTAAAACATTAAAAATTAACCTTAGTTCGG 120 Query 417 ATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATG 476 ||| | |||| || |||| ||||||| ||||||||||||||||| | | || ||| Sbjct 121 ATTATTCTCTGTAAGTCGAGAGTATGAAGGCGGAATCGCTAGTAATCGCAAAATAGAATG 180 Query 477 CTACGGTGAATA 488 | ||||||||| Sbjct 181 TTGCGGTGAATA 192 >seq1027 Length=5164 Score = 104 bits (114), Expect = 7e-20 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 297 GGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACA 356 ||| || |||||||||| ||| || ||| ||||||||||||||| ||||||||| | Sbjct 3910 GGAAGAAGTCAAATCATTATGGCCTATATAGATTGGGCTACACACGTACTACAATGGTAA 3851 Query 357 ATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGG 416 ||||| | | | ||| | || | || ||| | ||| || || ||||||| Sbjct 3850 TTACAATATGAAACAAAAATGTGAATTAGAGTAAAACATTAAAAATTAACCTTAGTTCGG 3791 Query 417 ATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATG 476 ||| | |||| || |||| ||||||| ||||||||||||||||| | | || ||| Sbjct 3790 ATTATTCTCTGTAAGTCGAGAGTATGAAGGCGGAATCGCTAGTAATCGCAAAATAGAATG 3731 Query 477 CTACGGTGAATA 488 | ||||||||| Sbjct 3730 TTGCGGTGAATA 3719 Score = 93.3 bits (102), Expect = 1e-16 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 ||||||||||||||| |||||||||| || |||||| | | ||||||||||| || Sbjct 4246 TACGACCGCAAGGTTAAAACTCAAAGAAACTGACGGAAGATTGTATAAGCGGTGGAGTAT 4187 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGA 104 ||||||||||| || ||||| || || |||||||| ||||| Sbjct 4186 GTGGTTTAATTTGATATAACGCAAAAAATCTTACCAATCCTTGA 4143 >seq31115 Length=1083 Score = 93.3 bits (102), Expect = 1e-16 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 ||||||||||||||| |||||||||| || |||||| | | ||||||||||| || Sbjct 935 TACGACCGCAAGGTTAAAACTCAAAGAAACTGACGGAAGATTGTATAAGCGGTGGAGTAT 994 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGA 104 ||||||||||| || ||||| || || |||||||| ||||| Sbjct 995 GTGGTTTAATTTGATATAACGCAAAAAATCTTACCAATCCTTGA 1038 >seq44233 Length=849 Score = 91.5 bits (100), Expect = 4e-16 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 ||||||||||||||| |||||||||| || |||||| | | ||||||||||| || Sbjct 747 TACGACCGCAAGGTTAAAACTCAAAGAAACTGACGGAAGATTGTATAAGCGGTGGAGTAT 806 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTG 103 ||||||||||| || ||||| || || |||||||| |||| Sbjct 807 GTGGTTTAATTTGATATAACGCAAAAAATCTTACCAATCCTTG 849 >seq48827 Length=765 Score = 89.7 bits (98), Expect = 2e-15 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 ||||||||||||||| |||||||||| || |||||| | | ||||||||||| || Sbjct 143 TACGACCGCAAGGTTAAAACTCAAAGAAACTGACGGAAGATTGTATAAGCGGTGGAGTAT 84 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGA 104 ||||||||||| || ||||| || | |||||||| ||||| Sbjct 83 GTGGTTTAATTTGATATAACGCAAAAATACTTACCAATCCTTGA 40 >seq52607 Length=750 Score = 82.4 bits (90), Expect = 2e-13 Identities = 115/160 (72%), Gaps = 1/160 (1%) Strand=Plus/Minus Query 329 TTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGC 388 ||||||||||||||| ||||||||| | ||||| | | | ||| | || | || Sbjct 744 TTGGGCTACACACGTACTACAATGGTAATTACAATATGAAACAAAAT-GTGAATTAGAGT 686 Query 389 AAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTG 448 ||| | ||| || || |||||||||| | |||| || |||| ||||||| | Sbjct 685 AAAACATTAAAAATTAACCTTAGTTCGGATTATTCTCTGTAAGTCGAGAGTATGAAGGCG 626 Query 449 GAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATA 488 |||||||||||||||| | | || ||| | ||||||||| Sbjct 625 GAATCGCTAGTAATCGCAAAATAGAATGTTGCGGTGAATA 586 >seq53214 Length=859 Score = 78.8 bits (86), Expect = 3e-12 Identities = 82/105 (78%), Gaps = 2/105 (2%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAA-CTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCA 59 ||||||||||||||| ||| ||||||| || |||||| | | |||||||||| | Sbjct 676 TACGACCGCAAGGTTAAAAACTCAAAGAAACTGACGGAAGATTGTATAAGCGGTGGAT-A 734 Query 60 TGTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGA 104 |||||||||||| || ||||| || || |||||||| ||||| Sbjct 735 TGTGGTTTAATTTGATATAACGCAAAAAATCTTACCAATCCTTGA 779 >seq48961 Length=710 Score = 78.8 bits (86), Expect = 3e-12 Identities = 70/88 (80%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 ||||||||||||||| |||||||||| || |||||| | | ||||||||||| || Sbjct 90 TACGACCGCAAGGTTAAAACTCAAAGAAACTGACGGAAGATTGTATAAGCGGTGGAGTAT 31 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAA 88 ||||||||||| || ||||| || || Sbjct 30 GTGGTTTAATTTGATATAACGCAAAAAA 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503133786240