Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20comandoni_20[genbank_20GCA_5F002025285.1_202017-03- 13] 57,594 sequences; 86,214,659 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq42285 100 5e-19 seq44247 98.7 2e-18 seq46151 91.5 3e-16 seq3495 77.0 6e-12 >seq42285 Length=612 Score = 100 bits (110), Expect = 5e-19 Identities = 79/93 (85%), Gaps = 5/93 (5%) Strand=Plus/Plus Query 206 TATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCG---AGGGA--CTAAAG 260 |||||||||||||||||||||| |||||||||| |||||| || | ||| |||||| Sbjct 1 TATCCCTGTGGTAACTTTTCTGACACCTCTAGCTTCAAATCCCGAAAACGGACTCTAAAG 60 Query 261 GATCGATAGGCCACACTTTCATGGTTTGTATTC 293 ||||||||||||| |||||| |||||||||| Sbjct 61 GATCGATAGGCCATGCTTTCACAGTTTGTATTC 93 >seq44247 Length=606 Score = 98.7 bits (108), Expect = 2e-18 Identities = 78/92 (85%), Gaps = 5/92 (5%) Strand=Plus/Plus Query 207 ATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCG---AGGGA--CTAAAGG 261 ||||||||||||||||||||| |||||||||| |||||| || | ||| ||||||| Sbjct 1 ATCCCTGTGGTAACTTTTCTGACACCTCTAGCTTCAAATCCCGAAAACGGACTCTAAAGG 60 Query 262 ATCGATAGGCCACACTTTCATGGTTTGTATTC 293 |||||||||||| |||||| |||||||||| Sbjct 61 ATCGATAGGCCATGCTTTCACAGTTTGTATTC 92 >seq46151 Length=495 Score = 91.5 bits (100), Expect = 3e-16 Identities = 74/88 (84%), Gaps = 5/88 (6%) Strand=Plus/Plus Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCG---AGGGA--CTAAAGGATCG 265 ||||||||||||||||| |||||||||| |||||| || | ||| ||||||||||| Sbjct 1 CTGTGGTAACTTTTCTGACACCTCTAGCTTCAAATCCCGAAAACGGACTCTAAAGGATCG 60 Query 266 ATAGGCCACACTTTCATGGTTTGTATTC 293 |||||||| |||||| |||||||||| Sbjct 61 ATAGGCCATGCTTTCACAGTTTGTATTC 88 >seq3495 Length=8188 Score = 77.0 bits (84), Expect = 6e-12 Identities = 66/80 (83%), Gaps = 5/80 (6%) Strand=Plus/Plus Query 219 ACTTTTCTGGCACCTCTAGCCTCAAATTTCGAG---GGACT--AAAGGATCGATAGGCCA 273 ||||||||| |||||||||| |||||| ||| ||||| ||||||||||||||||| Sbjct 1 ACTTTTCTGACACCTCTAGCTTCAAATCCCGAAAACGGACTCTAAAGGATCGATAGGCCA 60 Query 274 CACTTTCATGGTTTGTATTC 293 |||||| |||||||||| Sbjct 61 TGCTTTCACAGTTTGTATTC 80 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 853907916864