Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20comandoni_20[genbank_20GCA_5F002025285.1_202017-03- 13] 57,594 sequences; 86,214,659 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq32881 138 2e-30 seq1026 132 8e-29 seq49173 131 3e-28 seq25286 120 5e-25 seq29591 111 2e-22 seq44211 107 3e-21 seq48851 95.1 2e-17 seq44192 77.0 5e-12 seq48957 75.2 2e-11 >seq32881 Length=1009 Score = 138 bits (152), Expect = 2e-30 Identities = 186/259 (72%), Gaps = 5/259 (2%) Strand=Plus/Minus Query 17 CTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAG 76 |||| |||| ||||| |||| || | || ||||| | ||||||||| | | Sbjct 931 CTTATATGCTTTCAGTAATTATAATTTTTATACGTAGCTACTCAGCTATGCTTTATATAA 872 Query 77 TACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTC 136 ||||||| | ||||| ||| | | || ||||||||||| | | | | | || Sbjct 871 AACAACTGATTTACCAGTGGTATACATTTTCCAATCCTCTCGTACAAGGAAAATATTTTC 812 Query 137 TCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCA 196 |||| ||| | | ||| |||||| |||||||||| || | ||||||| |||||| Sbjct 811 TCAATTTTGAAA-----ATGACAGATAGGAACCGAACTGTTTCACAACGTTCTAAACCCA 757 Query 197 GCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGG 256 ||| ||| || ||||||| ||||||||||| ||||||||| ||| || |||| ||||| Sbjct 756 ACTCACGTACCACTTTAATAGGCGAACAGCCTAACCCTTGGAACCGCCTGCAGCTCCAGG 697 Query 257 ATGAGACGAGCCGACATCG 275 ||| || ||| |||||||| Sbjct 696 ATGTGATGAGTCGACATCG 678 >seq1026 Length=8135 Score = 132 bits (146), Expect = 8e-29 Identities = 186/260 (72%), Gaps = 6/260 (2%) Strand=Plus/Plus Query 17 CTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAG 76 |||| |||| ||||| |||| || | || ||||| | ||||||||| | | Sbjct 220 CTTATATGCTTTCAGTAATTATAATTTTTATACGTAGCTACTCAGCTATGCTTTATATAA 279 Query 77 TACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTC 136 ||||||| | ||||| ||| | | || ||||||||||| | | | | | || Sbjct 280 AACAACTGATTTACCAGTGGTATACATTTTCCAATCCTCTCGTACAAGGAAAATATTTTC 339 Query 137 TCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCA 196 |||| ||| | | ||| |||||| |||||||||| || | ||||||| |||||| Sbjct 340 TCAATTTTGAAA-----ATGACAGATAGGAACCGAACTGTTTCACAACGTTCTAAACCCA 394 Query 197 GCTCGCGTG-CCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAG 255 ||| ||| || ||||||| ||||||||||| ||||||||| ||| || |||| |||| Sbjct 395 ACTCACGTAACCACTTTAATAGGCGAACAGCCTAACCCTTGGAACCGCCTGCAGCTCCAG 454 Query 256 GATGAGACGAGCCGACATCG 275 |||| || ||| |||||||| Sbjct 455 GATGTGATGAGTCGACATCG 474 >seq49173 Length=436 Score = 131 bits (144), Expect = 3e-28 Identities = 185/259 (71%), Gaps = 6/259 (2%) Strand=Plus/Plus Query 17 CTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAG 76 |||| |||| ||||| |||| || | || ||||| | ||||||||| | | Sbjct 162 CTTATATGCTTTCAGTAATTATAATTTTTATACGTAGCTACTCAGCTATGCTTTATATAA 221 Query 77 TACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTC 136 ||||||| | ||||| ||| | | || ||||||||||| | | | | | || Sbjct 222 AACAACTGATTTACCAGTGGTATACATTTTCCAATCCTCTCGTACAAGGAAAATATTTTC 281 Query 137 TCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCA 196 |||| ||| | | ||| |||||| |||||||||| || | ||||||| |||||| Sbjct 282 TCAATTTTGAAA-----ATGACAGATAGGAACCGAACTGTTTCACAACGTTCTAAACCCA 336 Query 197 GCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGG 256 ||| ||| || ||| ||| ||||||||||| ||||||||| ||| || |||| ||||| Sbjct 337 ACTCACGTACCACTT-AATAGGCGAACAGCCTAACCCTTGGAACCGCCTGCAGCTCCAGG 395 Query 257 ATGAGACGAGCCGACATCG 275 ||| || ||| |||||||| Sbjct 396 ATGTGATGAGTCGACATCG 414 >seq25286 Length=1291 Score = 120 bits (132), Expect = 5e-25 Identities = 186/263 (71%), Gaps = 9/263 (3%) Strand=Plus/Plus Query 17 CTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAG 76 |||| |||| ||||| |||| || | || ||||| | ||||||||| | | Sbjct 976 CTTATATGCTTTCAGTAATTATAATTTTTATACGTAGCTACTCAGCTATGCTTTATATAA 1035 Query 77 TACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTC 136 ||||||| | ||||| ||| | | || ||||||||||| | | | | | || Sbjct 1036 AACAACTGATTTACCAGTGGTATACATTTTCCAATCCTCTCGTACAAGGAAAATATTTTC 1095 Query 137 TCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCA 196 |||| ||| | | ||| |||||| |||||||||| || | ||||||| |||||| Sbjct 1096 TCAATTTT-----GAAAATGACAGATAGGAACCGAACTGTTTCACAACGTTCTAAACCCA 1150 Query 197 GCTCGCGT--GCCTCTTTAATGGGCGAAC-AGCCCAACCCTTGGGACCTACTTCAGCC-C 252 ||| ||| | ||||||| ||||||| |||| ||||||||| ||| || ||||| | Sbjct 1151 ACTCACGTTACCMACTTTAATAGGCGAACAAGCCTAACCCTTGGAACCGCCTGCAGCCTC 1210 Query 253 CAGGATGAGACGAGCCGACATCG 275 ||||||| || ||| |||||||| Sbjct 1211 CAGGATGTGATGAGTCGACATCG 1233 >seq29591 Length=381 Score = 111 bits (122), Expect = 2e-22 Identities = 187/264 (71%), Gaps = 10/264 (4%) Strand=Plus/Plus Query 17 CTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAG 76 |||| |||| ||||| |||| || | || ||||| | ||||||||| | | Sbjct 99 CTTATATGCTTTCAGTAATTATAATTTTTATACGTAGCTACTCAGCTATGCTTTATATAA 158 Query 77 TACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTC 136 ||||||| | ||||| ||| | | || ||||||||||| | | | | | || Sbjct 159 AACAACTGATTTACCAGTGGTATACATTTTCCAATCCTCTCGTACAAGGAAAATATTTTC 218 Query 137 TCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTC-GCGACGTTCTGAACCC 195 |||| ||| | | ||| |||||| |||||||||| || | ||||||| ||||| Sbjct 219 TCAATTTT-----GAAAATGACAGATAGGAACCGAACTGTTTCAACAACGTTCTAAACCC 273 Query 196 AGCTCGCGT-GCCTCTTTAATGGGCGAAC-AGCCCAACCCTTGGGACCTACTTCAGCC-C 252 | ||| ||| || ||||||| ||||||| |||| ||||||||| ||| || ||||| | Sbjct 274 AACTCACGTAACCACTTTAATAGGCGAACAAGCCTAACCCTTGGAACCGCCTGCAGCCTC 333 Query 253 CAGGATG-AGACGAGCCGACATCG 275 ||||||| || ||| |||||||| Sbjct 334 CAGGATGTCGATGAGTCGACATCG 357 >seq44211 Length=1315 Score = 107 bits (118), Expect = 3e-21 Identities = 186/264 (70%), Gaps = 10/264 (4%) Strand=Plus/Plus Query 17 CTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAG 76 |||| |||| ||||| |||| || | || ||||| | ||||||||| | | Sbjct 1055 CTTATATGCTTTCAGTAATTATAATTTTTATACGTAGCTACTCAGCTATGCTTTATATAA 1114 Query 77 TACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTC 136 ||||||| | ||||| ||| | | || ||||||||||| | | | | | || Sbjct 1115 AACAACTGATTTACCAGTGGTATACATTTTCCAATCCTCTCGTACAAGGAAAATATTTTC 1174 Query 137 TCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACG-TTCTGAACCC 195 |||| ||| | | ||| |||||| |||||||||| || | ||| |||| ||||| Sbjct 1175 TCAATTTT-----GAAAATGACAGATAGGAACCGAACTGTTTCACAACGTTTCTAAACCC 1229 Query 196 AGCTCGCGT-GCCTCTTTAAT-GGGCGAAC-AGCCCAACCCTTGGGACCTACTTCAGCCC 252 | ||| ||| || ||||||| ||||||| |||| ||||||||| ||| || |||| | Sbjct 1230 AACTCACGTAACCACTTTAATACGGCGAACAAGCCTAACCCTTGGAACCGCCTGCAGCTC 1289 Query 253 CAGGATG-AGACGAGCCGACATCG 275 ||||||| || ||| |||||||| Sbjct 1290 CAGGATGTCGATGAGTCGACATCG 1313 >seq48851 Length=610 Score = 95.1 bits (104), Expect = 2e-17 Identities = 184/264 (70%), Gaps = 12/264 (5%) Strand=Plus/Plus Query 17 CTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAG 76 |||| |||| ||||| |||| || | || ||||| | ||||||||| | | Sbjct 352 CTTATATGCTTTCAGTAATTATAATTTTTATACGTAGCTACTCAGCTATGCTTTATATAA 411 Query 77 TACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTC 136 ||||||| | ||||| ||| | | || ||||||||||| | | | | | || Sbjct 412 AACAACTGATTTACCAGTGGTATACATTTTCCAATCCTCTCGTACAAGGAAAATATTTTC 471 Query 137 TCAAATTTCCTACGCCCACG-ACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCC 195 |||| ||| | | | || |||||| |||||||||| || | ||||||| ||||| Sbjct 472 TCAATTTT-----GAAAATGAACAGATAGGAACCGAACTGTTTCACAACGTTCTAAACCC 526 Query 196 AGCTCGCGT-GCCTCTTTAATGGGCGAAC-AGCCCAACCCTTGGGACCTACT--TCAGCC 251 | ||| ||| || ||||||| ||||||| |||| ||||||||| ||| || |||| Sbjct 527 AACTCACGTAACCACTTTAATAGGCGAACAAGCCTAACCCTTGGAACCGCCTAGCAAGCC 586 Query 252 -CCAGGATG-AGACGAGCCGACAT 273 |||||||| || ||| |||||| Sbjct 587 TCCAGGATGTCGATGAGTCGACAT 610 >seq44192 Length=664 Score = 77.0 bits (84), Expect = 5e-12 Identities = 75/95 (79%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 186 TTCTGAACCCAGCTCGCGTG-CCTCTT----TAATGGGCGAACAGCCCAACCCTTGGGAC 240 |||| |||||| ||| ||| || ||| |||| ||||||||||| ||||||||| || Sbjct 664 TTCTAAACCCAACTCACGTAACCACTTAAATTAATAGGCGAACAGCCTAACCCTTGGAAC 605 Query 241 CTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 | || |||| |||||||| || ||| |||||||| Sbjct 604 CGCCTGCAGCTCCAGGATGTGATGAGTCGACATCG 570 >seq48957 Length=367 Score = 75.2 bits (82), Expect = 2e-11 Identities = 149/217 (69%), Gaps = 8/217 (4%) Strand=Plus/Plus Query 17 CTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAG 76 |||| |||| ||||| |||| || | || ||||| | ||||||||| | | Sbjct 156 CTTATATGCTTTCAGTAATTATAATTTTTATACGTAGCTACTCAGCTATGCTTTATATAA 215 Query 77 TACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTC 136 ||||||| | ||||| ||| | | || ||||||||||| | | | | | || Sbjct 216 AACAACTGATTTACCAGTGGTATACATTTTCCAATCCTCTCGTACAAGGAAAATATTTTC 275 Query 137 TCAAATTTCCTACGCCCACG-ACGGATAGGGACCGAACTGTCTC-GCGACGTTCTGAACC 194 |||| ||| | | | || |||||| |||||||||| || | ||||||| |||| Sbjct 276 TCAATTTT-----GAAAATGAACAGATAGGAACCGAACTGTTTCAACAACGTTCTAAACC 330 Query 195 CAGCTCGCGT-GCCTCTTTAATGGGCGAACAGCCCAA 230 || ||| ||| || ||||||| ||||||||||| || Sbjct 331 CAACTCACGTAACCACTTTAATAGGCGAACAGCCTAA 367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780364358984