Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20comandoni_20[genbank_20GCA_5F002025285.1_202017-03- 13] 57,594 sequences; 86,214,659 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq45361 179 7e-43 seq30935 179 7e-43 seq18978 179 7e-43 seq17368 179 7e-43 seq951 176 9e-42 seq371 78.8 2e-12 >seq45361 Length=527 Score = 179 bits (198), Expect = 7e-43 Identities = 124/139 (89%), Gaps = 1/139 (1%) Strand=Plus/Minus Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTT-GTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 ||| ||||| |||||||||||||||| || ||| | |||||||||||||||| |||| Sbjct 392 CCTGGGCCGATAGGTCTGGGTAATCTTTGTGAAATTTAATCGTGCTGGGGATAGATCATT 333 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 | |||||||| ||||||||||||||| ||||||||||||| ||||||||| ||||||||| Sbjct 332 GTAATTATTGATCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGAT 273 Query 310 TACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||| Sbjct 272 TACGTCCCTGCCCTTTGTA 254 >seq30935 Length=632 Score = 179 bits (198), Expect = 7e-43 Identities = 124/139 (89%), Gaps = 1/139 (1%) Strand=Plus/Minus Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTT-GTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 ||| ||||| |||||||||||||||| || ||| | |||||||||||||||| |||| Sbjct 274 CCTGGGCCGATAGGTCTGGGTAATCTTTGTGAAATTTAATCGTGCTGGGGATAGATCATT 215 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 | |||||||| ||||||||||||||| ||||||||||||| ||||||||| ||||||||| Sbjct 214 GTAATTATTGATCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGAT 155 Query 310 TACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||| Sbjct 154 TACGTCCCTGCCCTTTGTA 136 Score = 154 bits (170), Expect = 3e-35 Identities = 105/117 (90%), Gaps = 1/117 (1%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||||||| || || | ||| || ||||||||||||||||||||||||||| Sbjct 482 GCTTCTTAGAGGGACTGTCTGCGCTTAGCAGACGGAAGTTTGAGGCAATAACAGGTCTGT 423 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTC 186 ||||||||||||||||||||||||||||||||||||||||| | |||||||||| Sbjct 422 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATTAATTCAACGAGTTC 366 >seq18978 Length=4319 Score = 179 bits (198), Expect = 7e-43 Identities = 124/139 (89%), Gaps = 1/139 (1%) Strand=Plus/Minus Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTT-GTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 ||| ||||| |||||||||||||||| || ||| | |||||||||||||||| |||| Sbjct 3689 CCTGGGCCGATAGGTCTGGGTAATCTTTGTGAAATTTAATCGTGCTGGGGATAGATCATT 3630 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 | |||||||| ||||||||||||||| ||||||||||||| ||||||||| ||||||||| Sbjct 3629 GTAATTATTGATCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGAT 3570 Query 310 TACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||| Sbjct 3569 TACGTCCCTGCCCTTTGTA 3551 Score = 154 bits (170), Expect = 3e-35 Identities = 105/117 (90%), Gaps = 1/117 (1%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||||||| || || | ||| || ||||||||||||||||||||||||||| Sbjct 3895 GCTTCTTAGAGGGACTGTCTGCGCTTAGCAGACGGAAGTTTGAGGCAATAACAGGTCTGT 3836 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTC 186 ||||||||||||||||||||||||||||||||||||||||| | |||||||||| Sbjct 3835 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATTAATTCAACGAGTTC 3779 >seq17368 Length=2821 Score = 179 bits (198), Expect = 7e-43 Identities = 124/139 (89%), Gaps = 1/139 (1%) Strand=Plus/Plus Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTT-GTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 ||| ||||| |||||||||||||||| || ||| | |||||||||||||||| |||| Sbjct 366 CCTGGGCCGATAGGTCTGGGTAATCTTTGTGAAATTTAATCGTGCTGGGGATAGATCATT 425 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 | |||||||| ||||||||||||||| ||||||||||||| ||||||||| ||||||||| Sbjct 426 GTAATTATTGATCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGAT 485 Query 310 TACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||| Sbjct 486 TACGTCCCTGCCCTTTGTA 504 Score = 154 bits (170), Expect = 3e-35 Identities = 105/117 (90%), Gaps = 1/117 (1%) Strand=Plus/Plus Query 71 GCTTCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||||||| || || | ||| || ||||||||||||||||||||||||||| Sbjct 160 GCTTCTTAGAGGGACTGTCTGCGCTTAGCAGACGGAAGTTTGAGGCAATAACAGGTCTGT 219 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTC 186 ||||||||||||||||||||||||||||||||||||||||| | |||||||||| Sbjct 220 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATTAATTCAACGAGTTC 276 >seq951 Length=9632 Score = 176 bits (194), Expect = 9e-42 Identities = 123/139 (88%), Gaps = 1/139 (1%) Strand=Plus/Plus Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTT-GTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 ||| ||||| |||||||||||||||| || ||| | |||||||||||||||| |||| Sbjct 9489 CCTGGGCCGATAGGTCTGGGTAATCTTTGTGAAATTTAATCGTGCTGGGGATAGATCATT 9548 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 | | |||||| ||||||||||||||| ||||||||||||| ||||||||| ||||||||| Sbjct 9549 GTAGTTATTGATCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGAT 9608 Query 310 TACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||| Sbjct 9609 TACGTCCCTGCCCTTTGTA 9627 >seq371 Length=2716 Score = 78.8 bits (86), Expect = 2e-12 Identities = 56/63 (89%), Gaps = 1/63 (2%) Strand=Plus/Plus Query 71 GCTTCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||||||| || || | ||| || ||||||||||||||||||||||||||| Sbjct 2654 GCTTCTTAGAGGGACTGTCTGCGCTTAGCAGACGGAAGTTTGAGGCAATAACAGGTCTGT 2713 Query 130 GAT 132 ||| Sbjct 2714 GAT 2716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946654469632