Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20comandoni_20[genbank_20GCA_5F002025285.1_202017-03- 13] 57,594 sequences; 86,214,659 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq42285 271 2e-70 seq44247 255 2e-65 seq46151 149 2e-33 seq27773 147 7e-33 seq3495 114 4e-23 seq53055 86.0 2e-14 >seq42285 Length=612 Score = 271 bits (300), Expect = 2e-70 Identities = 168/180 (93%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||||| |||| |||||||||||||| |||||||||||||||||||| Sbjct 433 CTCCCACTTATTCTACGCCTCCAGCGTCATTTCACAAAGCCGGACTAGAGTCAAGCTCAA 492 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 493 CAGGGTCTTCTTTCCCCGCTGATCGTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGG 552 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 553 GTGGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 612 Score = 149 bits (164), Expect = 2e-33 Identities = 105/120 (88%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| |||||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 128 CTTTTGTTCTACATGAGATTTCTGTTCTCATTGAGCTCATCTTAGGACACCTGCGTTATC 187 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||| ||||| || ||| || || Sbjct 188 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACTATGTCCTCGACCTGGGTC 247 >seq44247 Length=606 Score = 255 bits (282), Expect = 2e-65 Identities = 163/176 (93%), Gaps = 1/176 (1%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||||| |||| |||||||||||||| |||||||||||||||||||| Sbjct 431 CTCCCACTTATTCTACGCCTCCAGCGTCATTTCACAAAGCCGGACTAGAGTCAAGCTCAA 490 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCC-GTTCCCTTGGCTGTGGTTTCGCTA 355 ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| Sbjct 491 CAGGGTCTTCTTTCCCCGCTGATCGTGCCAAGCCCCGTTCCCTTGGCTGTGGTTTCGCTG 550 Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATT 411 | | |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 551 GGTGGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATT 606 Score = 149 bits (164), Expect = 2e-33 Identities = 105/120 (88%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| |||||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 127 CTTTTGTTCTACATGAGATTTCTGTTCTCATTGAGCTCATCTTAGGACACCTGCGTTATC 186 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||| ||||| || ||| || || Sbjct 187 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACTATGTCCTCGACCTGGGTC 246 >seq46151 Length=495 Score = 149 bits (164), Expect = 2e-33 Identities = 105/120 (88%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| |||||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 123 CTTTTGTTCTACATGAGATTTCTGTTCTCATTGAGCTCATCTTAGGACACCTGCGTTATC 182 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||| ||||| || ||| || || Sbjct 183 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACTATGTCCTCGACCTGGGTC 242 Score = 91.5 bits (100), Expect = 5e-16 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||||| |||| |||||||||||||| |||||||||||||||||||| Sbjct 431 CTCCCACTTATTCTACGCCTCCAGCGTCATTTCACAAAGCCGGACTAGAGTCAAGCTCAA 490 Query 297 CAGGG 301 ||||| Sbjct 491 CAGGG 495 >seq27773 Length=1137 Score = 147 bits (162), Expect = 7e-33 Identities = 86/88 (98%), Gaps = 1/88 (1%) Strand=Plus/Minus Query 447 TAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGAC-ATTCAGAGC 505 |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| Sbjct 1137 TAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATCTCTTCACTTTGACAATTCAGAGC 1078 Query 506 ACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||||||||| Sbjct 1077 ACTGGGCAGAAATCACATTGCGTCAACA 1050 >seq3495 Length=8188 Score = 114 bits (126), Expect = 4e-23 Identities = 78/88 (89%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| |||||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 115 CTTTTGTTCTACATGAGATTTCTGTTCTCATTGAGCTCATCTTAGGACACCTGCGTTATC 174 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAA 94 ||||||||||||||||||||||||||| Sbjct 175 TTTTAACAGATGTGCCGCCCCAGCCAAA 202 >seq53055 Length=608 Score = 86.0 bits (94), Expect = 2e-14 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| |||||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 87 CTTTTGTTCTACATGAGATTTCTGTTCTCATTGAGCTCATCTTAGGACACCTGCGTTATC 146 Query 67 GTTTAACAGATG 78 ||||||||||| Sbjct 147 TTTTAACAGATG 158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634258222912