Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20comandoni_20[genbank_20GCA_5F002025285.1_202017-03- 13] 57,594 sequences; 86,214,659 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq44458 104 4e-20 seq44035 104 4e-20 seq37462 104 4e-20 seq36891 104 4e-20 seq28053 104 4e-20 seq40284 98.7 2e-18 >seq44458 Length=623 Score = 104 bits (114), Expect = 4e-20 Identities = 97/121 (80%), Gaps = 2/121 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||| | || |||||| |||||||| ||| | || | || | |||| Sbjct 530 GTACGAGAGGAACAGTCGA-TTCAGA-TAATTGGTATTTTCCTTTGGCCGAAAGGCCAGT 473 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | | |||||||||||||| |||||||||||||||||||||||| |||||||| ||| | Sbjct 472 GAGGAGAAGCTACCATCTGTGGGATTATGGCTGAACGCCTCTAAGCCAGAATCCGTGCTA 413 Query 121 G 121 | Sbjct 412 G 412 >seq44035 Length=451 Score = 104 bits (114), Expect = 4e-20 Identities = 97/121 (80%), Gaps = 2/121 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||| | || |||||| |||||||| ||| | || | || | |||| Sbjct 408 GTACGAGAGGAACAGTCGA-TTCAGA-TAATTGGTATTTTCCTTTGGCCGAAAGGCCAGT 351 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | | |||||||||||||| |||||||||||||||||||||||| |||||||| ||| | Sbjct 350 GAGGAGAAGCTACCATCTGTGGGATTATGGCTGAACGCCTCTAAGCCAGAATCCGTGCTA 291 Query 121 G 121 | Sbjct 290 G 290 >seq37462 Length=615 Score = 104 bits (114), Expect = 4e-20 Identities = 97/121 (80%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||| | || |||||| |||||||| ||| | || | || | |||| Sbjct 90 GTACGAGAGGAACAGTCGA-TTCAGA-TAATTGGTATTTTCCTTTGGCCGAAAGGCCAGT 147 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | | |||||||||||||| |||||||||||||||||||||||| |||||||| ||| | Sbjct 148 GAGGAGAAGCTACCATCTGTGGGATTATGGCTGAACGCCTCTAAGCCAGAATCCGTGCTA 207 Query 121 G 121 | Sbjct 208 G 208 >seq36891 Length=650 Score = 104 bits (114), Expect = 4e-20 Identities = 97/121 (80%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||| | || |||||| |||||||| ||| | || | || | |||| Sbjct 87 GTACGAGAGGAACAGTCGA-TTCAGA-TAATTGGTATTTTCCTTTGGCCGAAAGGCCAGT 144 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | | |||||||||||||| |||||||||||||||||||||||| |||||||| ||| | Sbjct 145 GAGGAGAAGCTACCATCTGTGGGATTATGGCTGAACGCCTCTAAGCCAGAATCCGTGCTA 204 Query 121 G 121 | Sbjct 205 G 205 >seq28053 Length=649 Score = 104 bits (114), Expect = 4e-20 Identities = 97/121 (80%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||| | || |||||| |||||||| ||| | || | || | |||| Sbjct 90 GTACGAGAGGAACAGTCGA-TTCAGA-TAATTGGTATTTTCCTTTGGCCGAAAGGCCAGT 147 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | | |||||||||||||| |||||||||||||||||||||||| |||||||| ||| | Sbjct 148 GAGGAGAAGCTACCATCTGTGGGATTATGGCTGAACGCCTCTAAGCCAGAATCCGTGCTA 207 Query 121 G 121 | Sbjct 208 G 208 >seq40284 Length=592 Score = 98.7 bits (108), Expect = 2e-18 Identities = 91/113 (81%), Gaps = 2/113 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||| | || |||||| |||||||| ||| | || | || | |||| Sbjct 510 GTACGAGAGGAACAGTCGA-TTCAGA-TAATTGGTATTTTCCTTTGGCCGAAAGGCCAGT 453 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 | | |||||||||||||| |||||||||||||||||||||||| ||||||| Sbjct 452 GAGGAGAAGCTACCATCTGTGGGATTATGGCTGAACGCCTCTAAGCCAGAATC 400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 818742934016