Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20comandoni_20[genbank_20GCA_5F002025285.1_202017-03- 13] 57,594 sequences; 86,214,659 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq40050 333 8e-89 seq31452 333 8e-89 seq37016 253 6e-65 seq46941 214 5e-53 seq50762 208 2e-51 seq46928 206 8e-51 seq37203 206 8e-51 seq49067 185 3e-44 seq45983 176 1e-41 seq56645 161 3e-37 seq47486 158 4e-36 seq48914 118 3e-24 seq22814 113 1e-22 >seq40050 Length=657 Score = 333 bits (368), Expect = 8e-89 Identities = 227/254 (89%), Gaps = 1/254 (0%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAA-GAGCCCTGTATCAGTATTTATTGTCACTACC 59 |||||||||||||||||||||| | ||| ||||||| ||||||||||||||||| Sbjct 625 GTACTCATTCCAATTACAAGACTCTTGTCGAGACCTGTATTGTTATTTATTGTCACTACC 566 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| | Sbjct 565 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGAAGTGGTAGCCAT 506 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| Sbjct 505 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTTACCCGTTACGACCATGGT 446 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 ||||| ||||||||||||||||||||||||||||||||||||||||||| | |||| | | Sbjct 445 AGGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAATCGTCGCTGTC 386 Query 240 TCAAGGCCATGCGA 253 | ||| ||||| Sbjct 385 ACCCCGCCTTGCGA 372 Score = 170 bits (188), Expect = 6e-40 Identities = 126/147 (86%), Gaps = 10/147 (7%) Strand=Plus/Minus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAG-------GTACTATCA 396 ||||||||||||||||||||||||||||||||||| ||||||| | || |||| Sbjct 147 GCATGTATTAGCTCTAGAATTACCACGGTTATCCAAGTAGTAAAAATAAAAGGACCATCA 88 Query 397 AATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGC---TTAT 453 ||||||| ||||||||||||||||||||| |||||| |||| ||||| | || |||| Sbjct 87 AATAAACTATAACTGATTTAATGAGCCATCCGCAGTCTCACCGTATAAAAAGCAGTTTAT 28 Query 454 ACTTAGACATGCATGGCTTAATCTTTG 480 ||||||||||||||||||||||||||| Sbjct 27 ACTTAGACATGCATGGCTTAATCTTTG 1 >seq31452 Length=1121 Score = 333 bits (368), Expect = 8e-89 Identities = 227/254 (89%), Gaps = 1/254 (0%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAA-GAGCCCTGTATCAGTATTTATTGTCACTACC 59 |||||||||||||||||||||| | ||| ||||||| ||||||||||||||||| Sbjct 52 GTACTCATTCCAATTACAAGACTCTTGTCGAGACCTGTATTGTTATTTATTGTCACTACC 111 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| | Sbjct 112 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGAAGTGGTAGCCAT 171 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| Sbjct 172 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTTACCCGTTACGACCATGGT 231 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 ||||| ||||||||||||||||||||||||||||||||||||||||||| | |||| | | Sbjct 232 AGGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAATCGTCGCTGTC 291 Query 240 TCAAGGCCATGCGA 253 | ||| ||||| Sbjct 292 ACCCCGCCTTGCGA 305 Score = 205 bits (226), Expect = 3e-50 Identities = 150/176 (85%), Gaps = 15/176 (9%) Strand=Plus/Plus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAG------------GTAC 391 ||||||||||||||||||||||||||||||||||| ||||||| | || Sbjct 534 GCATGTATTAGCTCTAGAATTACCACGGTTATCCAAGTAGTAAAAAAAAAAGAAAAGGAC 593 Query 392 TATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGC-- 449 ||||||||||| ||||||||||||||||||||| |||||| |||| ||||| | || Sbjct 594 CATCAAATAAACTATAACTGATTTAATGAGCCATCCGCAGTCTCACCGTATAAAAAGCAG 653 Query 450 -TTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 654 TTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 709 >seq37016 Length=526 Score = 253 bits (280), Expect = 6e-65 Identities = 155/165 (94%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 71 GGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTC 130 |||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||| Sbjct 526 GGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGAAGTGGTAGCCATTTCTCAGGCTC 467 Query 131 CCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATC 190 ||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||| Sbjct 466 CCTCTCCGGAATCGAACCCTAATTCTCCGTTACCCGTTACGACCATGGTAGGCCTCTATC 407 Query 191 CTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGC 235 |||||||||||||||||||||||||||||||||||||| | |||| Sbjct 406 CTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAATCGTCGC 362 Score = 118 bits (130), Expect = 3e-24 Identities = 92/112 (82%), Gaps = 12/112 (11%) Strand=Plus/Minus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAG------------GTAC 391 ||||||||||||||||||||||||||||||||||| ||||||| | || Sbjct 118 GCATGTATTAGCTCTAGAATTACCACGGTTATCCAAGTAGTAAAAAAAAAAAAAAAGGAC 59 Query 392 TATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATA 443 ||||||||||| ||||||||||||||||||||| |||||| |||| ||||| Sbjct 58 CATCAAATAAACTATAACTGATTTAATGAGCCATCCGCAGTCTCACCGTATA 7 >seq46941 Length=570 Score = 214 bits (236), Expect = 5e-53 Identities = 150/171 (88%), Gaps = 10/171 (6%) Strand=Plus/Plus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAG-------GTACTATCA 396 ||||||||||||||||||||||||||||||||||| ||||||| | || |||| Sbjct 296 GCATGTATTAGCTCTAGAATTACCACGGTTATCCAAGTAGTAAAAATAAAAGGACCATCA 355 Query 397 AATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGC---TTAT 453 ||||||| ||||||||||||||||||||| |||||| |||| ||||| | || |||| Sbjct 356 AATAAACTATAACTGATTTAATGAGCCATCCGCAGTCTCACCGTATAAAAAGCAGTTTAT 415 Query 454 ACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 416 ACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 466 Score = 84.2 bits (92), Expect = 7e-14 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 183 CCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCA 242 || ||||||||||||||||||||||||||||||||||||||||||| | |||| | | | Sbjct 1 CCTCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAATCGTCGCTGTCACC 60 Query 243 AGGCCATGCGA 253 ||| ||||| Sbjct 61 CCGCCTTGCGA 71 >seq50762 Length=478 Score = 208 bits (230), Expect = 2e-51 Identities = 150/174 (86%), Gaps = 13/174 (7%) Strand=Plus/Plus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAG----------GTACTA 393 ||||||||||||||||||||||||||||||||||| ||||||| | || | Sbjct 300 GCATGTATTAGCTCTAGAATTACCACGGTTATCCAAGTAGTAAAAAAAAGAAAAGGACCA 359 Query 394 TCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGC---T 450 |||||||||| ||||||||||||||||||||| |||||| |||| ||||| | || | Sbjct 360 TCAAATAAACTATAACTGATTTAATGAGCCATCCGCAGTCTCACCGTATAAAAAGCAGTT 419 Query 451 TATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 TATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 473 Score = 84.2 bits (92), Expect = 7e-14 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 183 CCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCA 242 || ||||||||||||||||||||||||||||||||||||||||||| | |||| | | | Sbjct 1 CCTCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAATCGTCGCTGTCACC 60 Query 243 AGGCCATGCGA 253 ||| ||||| Sbjct 61 CCGCCTTGCGA 71 >seq46928 Length=649 Score = 206 bits (228), Expect = 8e-51 Identities = 150/175 (86%), Gaps = 14/175 (8%) Strand=Plus/Plus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAG-----------GTACT 392 ||||||||||||||||||||||||||||||||||| ||||||| | || Sbjct 325 GCATGTATTAGCTCTAGAATTACCACGGTTATCCAAGTAGTAAAAAAAAAGAAAAGGACC 384 Query 393 ATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGC--- 449 ||||||||||| ||||||||||||||||||||| |||||| |||| ||||| | || Sbjct 385 ATCAAATAAACTATAACTGATTTAATGAGCCATCCGCAGTCTCACCGTATAAAAAGCAGT 444 Query 450 TTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 445 TTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 499 Score = 116 bits (128), Expect = 1e-23 Identities = 84/97 (87%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 157 CCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGA 216 |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 3 CCGTTACCCGTTACGACCATGGTAGGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGA 62 Query 217 AATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGA 253 |||||||||||| | |||| | | | ||| ||||| Sbjct 63 AATTTGAATGAATCGTCGCTGTCACCCCGCCTTGCGA 99 >seq37203 Length=880 Score = 206 bits (228), Expect = 8e-51 Identities = 150/175 (86%), Gaps = 14/175 (8%) Strand=Plus/Minus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAG-----------GTACT 392 ||||||||||||||||||||||||||||||||||| ||||||| | || Sbjct 774 GCATGTATTAGCTCTAGAATTACCACGGTTATCCAAGTAGTAAAAAAAAAGAAAAGGACC 715 Query 393 ATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGC--- 449 ||||||||||| ||||||||||||||||||||| |||||| |||| ||||| | || Sbjct 714 ATCAAATAAACTATAACTGATTTAATGAGCCATCCGCAGTCTCACCGTATAAAAAGCAGT 655 Query 450 TTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 654 TTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 600 >seq49067 Length=749 Score = 185 bits (204), Expect = 3e-44 Identities = 146/175 (83%), Gaps = 15/175 (9%) Strand=Plus/Plus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTA---------T 394 ||||||||||||||||||||||||||||||||||| ||||||| | | | Sbjct 26 GCATGTATTAGCTCTAGAATTACCACGGTTATCCAAGTAGTAAAAAAAAAAAAAGACACT 85 Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGA-----TTGC 449 ||||||||| ||||||||||||||||||||| |||||| |||| ||||| | | Sbjct 86 CAAATAAACTATAACTGATTTAATGAGCCATCCGCAGTCTCACCGTATAAAAAAAGCAGT 145 Query 450 TTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 146 TTATACTTAGACATGCATGGCTTAATC-TTGAGACAAGCATATGACTACTGGCAG 199 >seq45983 Length=522 Score = 176 bits (194), Expect = 1e-41 Identities = 118/132 (89%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| Sbjct 1 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTTACCCGTTACGACCATGGTAG 60 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241 ||| ||||||||||||||||||||||||||||||||||||||||||| | |||| | | | Sbjct 61 GCCTCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAATCGTCGCTGTCAC 120 Query 242 AAGGCCATGCGA 253 ||| ||||| Sbjct 121 CCCGCCTTGCGA 132 Score = 167 bits (184), Expect = 7e-39 Identities = 133/161 (83%), Gaps = 17/161 (11%) Strand=Plus/Plus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGT-----------AAGGTACT 392 ||||||||||||||||||||||||||||||||||| ||||| || | || Sbjct 362 GCATGTATTAGCTCTAGAATTACCACGGTTATCCAAGTAGTAAAAAAAAAGAAAAGGACC 421 Query 393 ATCAAATAA---ACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGC 449 ||||||||| || ||||||||||||||||||||| |||||| |||| ||||| | || Sbjct 422 ATCAAATAAACTACTATAACTGATTTAATGAGCCATCCGCAGTCTCACCGTATAAAAAGC 481 Query 450 ---TTATACTTAGACATGCATGGCTTAATCTTTGAGACAAG 487 |||||||||||||||||||||||||||||||||||||| Sbjct 482 AGTTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAG 522 >seq56645 Length=432 Score = 161 bits (178), Expect = 3e-37 Identities = 126/152 (83%), Gaps = 15/152 (10%) Strand=Plus/Minus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAG------------GTAC 391 ||||||||||||||||||||||||||||||||||| ||||||| | || Sbjct 152 GCATGTATTAGCTCTAGAATTACCACGGTTATCCAAGTAGTAAAAAAAAAAGAAAAGGAC 93 Query 392 TATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGC-- 449 ||||||||||| ||||||||||||||||||||| |||||| |||| ||||| | || Sbjct 92 CATCAAATAAACTATAACTGATTTAATGAGCCATCCGCAGTCTCACCGTATAAAAAGCAG 33 Query 450 -TTATACTTAGACATGCATGGCTTAATCTTTG 480 ||||||||||||||||||||||||||||||| Sbjct 32 TTTATACTTAGACATGCATGGCTTAATCTTTG 1 >seq47486 Length=473 Score = 158 bits (174), Expect = 4e-36 Identities = 126/154 (82%), Gaps = 17/154 (11%) Strand=Plus/Plus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAG--------------GT 389 ||||||||||||||||||||||||||||||||||| ||||||| | Sbjct 320 GCATGTATTAGCTCTAGAATTACCACGGTTATCCAAGTAGTAAAAAAAAAAAAGAAAAGG 379 Query 390 ACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGC 449 || ||||||||||| ||||||||||||||||||||| |||||| |||| ||||| | || Sbjct 380 ACCATCAAATAAACTATAACTGATTTAATGAGCCATCCGCAGTCTCACCGTATAAAAAGC 439 Query 450 ---TTATACTTAGACATGCATGGCTTAATCTTTG 480 ||||||||||||||||||||||||||||||| Sbjct 440 AGTTTATACTTAGACATGCATGGCTTAATCTTTG 473 Score = 105 bits (116), Expect = 2e-20 Identities = 78/91 (86%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 222 |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1 CCCGTTACGACCATGGTAGGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 60 Query 223 AATGAACCATCGCCGGCTCAAGGCCATGCGA 253 |||||| | |||| | | | ||| ||||| Sbjct 61 AATGAATCGTCGCTGTCACCCCGCCTTGCGA 91 >seq48914 Length=436 Score = 118 bits (130), Expect = 3e-24 Identities = 92/112 (82%), Gaps = 12/112 (11%) Strand=Plus/Plus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAA------------GGTAC 391 ||||||||||||||||||||||||||||||||||| ||||||| || | Sbjct 321 GCATGTATTAGCTCTAGAATTACCACGGTTATCCAAGTAGTAAAAAAAAAGAAAAGGACC 380 Query 392 TATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATA 443 ||||||||||| ||||||||||||||||||||| |||||| |||| ||||| Sbjct 381 AATCAAATAAACTATAACTGATTTAATGAGCCATCCGCAGTCTCACCGTATA 432 Score = 105 bits (116), Expect = 2e-20 Identities = 78/91 (86%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 222 |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1 CCCGTTACGACCATGGTAGGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 60 Query 223 AATGAACCATCGCCGGCTCAAGGCCATGCGA 253 |||||| | |||| | | | ||| ||||| Sbjct 61 AATGAATCGTCGCTGTCACCCCGCCTTGCGA 91 >seq22814 Length=866 Score = 113 bits (124), Expect = 1e-22 Identities = 80/90 (89%), Gaps = 4/90 (4%) Strand=Plus/Plus Query 419 GAGCCATTCGCAGTTTCACTGTATAGATTGC---TTATACTTA-GACATGCATGGCTTAA 474 ||||||| |||||| |||| ||||| | || ||||||||| |||||||||||||||| Sbjct 1 GAGCCATCCGCAGTCTCACCGTATAAAAAGCAGTTTATACTTAAGACATGCATGGCTTAA 60 Query 475 TCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||| Sbjct 61 TCTTTGAGACAAGCATATGACTACTGGCAG 90 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509530100224