Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20culbertsoni_20[genbank_20GCA_5F000826265.1_202015-01- 06] 72,411 sequences; 55,543,795 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq21029 190 3e-46 seq64899 143 4e-32 seq68083 134 2e-29 seq67076 129 9e-28 seq57989 93.3 6e-17 >seq21029 Length=397 Score = 190 bits (210), Expect = 3e-46 Identities = 129/141 (91%), Gaps = 3/141 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| | Sbjct 234 GTACAAAGGGCAGGGACGTAATCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 291 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTT-CAAAGATT 119 ||||||||||| ||| |||| |||||||||||||||| |||||| |||||| |||||||| Sbjct 292 CTCGTTGAAGATCAATAATTACAATGATCTATCCCCAGCACGATTAAATTTGCAAAGATT 351 Query 120 ACCCGGACCTGTCGGCCAAGG 140 |||| ||||| |||||| ||| Sbjct 352 ACCCAGACCTATCGGCCCAGG 372 >seq64899 Length=139 Score = 143 bits (158), Expect = 4e-32 Identities = 82/84 (98%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 146 GACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 205 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 48 GACTCGTTGAATTAATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 107 Query 206 ACCTGTTATTGCCTCAAACTTCCG 229 |||||||||||||||||||||||| Sbjct 108 ACCTGTTATTGCCTCAAACTTCCG 131 >seq68083 Length=5301 Score = 134 bits (148), Expect = 2e-29 Identities = 80/84 (95%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 146 GACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 205 |||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||| Sbjct 334 GACTCGTTGAATTAATCAGTGTAGCACGTGTGCGGCCCAGAACATCTAAGGGCATCACAG 275 Query 206 ACCTGTTATTGCCTCAAACTTCCG 229 |||||||||||||||||||||||| Sbjct 274 ACCTGTTATTGCCTCAAACTTCCG 251 >seq67076 Length=521 Score = 129 bits (142), Expect = 9e-28 Identities = 79/84 (94%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 146 GACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 205 |||||||||||| ||||||||||| || |||||||||||||||||||||||||| |||| Sbjct 513 GACTCGTTGAATTAATCAGTGTAGCACGTGTGCGGCCCAGAACATCTAAGGGCATAACAG 454 Query 206 ACCTGTTATTGCCTCAAACTTCCG 229 |||||||||||||||||||||||| Sbjct 453 ACCTGTTATTGCCTCAAACTTCCG 430 >seq57989 Length=111 Score = 93.3 bits (102), Expect = 6e-17 Identities = 51/51 (100%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCG 229 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCG 51 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751472485865