Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20culbertsoni_20[genbank_20GCA_5F000826265.1_202015-01- 06] 72,411 sequences; 55,543,795 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq68869 149 3e-33 seq68868 149 3e-33 seq70840 138 5e-30 seq6573 96.9 1e-17 seq64763 91.5 6e-16 >seq68869 Length=3502 Score = 149 bits (164), Expect = 3e-33 Identities = 132/163 (81%), Gaps = 4/163 (2%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| |||| ||| ||||||| | | || ||||||| Sbjct 3264 GAGTCGGGTTGTTTGGGAATGCAGCCCTAAGCGGGTGGTAAATCCCACCCAAGGCTAAAT 3323 Query 100 ATTGG---CCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTG 156 ||||| | |||||||||||||| ||||||| |||| ||||| ||||||| |||||| Sbjct 3324 ATTGGTAGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGGTGAAAAGGACTTTG 3383 Query 157 GAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| | ||||| | |||||||||| ||||||||| Sbjct 3384 AAAAGAGAG-TCAAAAGTGCTTGAAATTGTTAGGAGGGAAGCG 3425 >seq68868 Length=3502 Score = 149 bits (164), Expect = 3e-33 Identities = 132/163 (81%), Gaps = 4/163 (2%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| |||| ||| ||||||| | | || ||||||| Sbjct 3264 GAGTCGGGTTGTTTGGGAATGCAGCCCTAAGCGGGTGGTAAATCCCACCCAAGGCTAAAT 3323 Query 100 ATTGG---CCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTG 156 ||||| | |||||||||||||| ||||||| |||| ||||| ||||||| |||||| Sbjct 3324 ATTGGTAGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGGTGAAAAGGACTTTG 3383 Query 157 GAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| | ||||| | |||||||||| ||||||||| Sbjct 3384 AAAAGAGAG-TCAAAAGTGCTTGAAATTGTTAGGAGGGAAGCG 3425 >seq70840 Length=676 Score = 138 bits (152), Expect = 5e-30 Identities = 135/173 (78%), Gaps = 1/173 (1%) Strand=Plus/Minus Query 511 TGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGG 570 ||||||| || |||| | ||| | | | | || |||||| ||||| || ||||||| Sbjct 621 TGCACCACCGGCCGACCTGGATTTTCTTGAAAGG-TTTGAGCTAGAGCGTATTTGTTGGG 563 Query 571 ACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGG 630 ||||||||||| |||||||||| ||| ||| |||||||||||||||||||||||||| Sbjct 562 ACCCGAAAGATTGTGAACTATGGGTGACCAGGACGAAGCCAGAGGAAACTCTGGTGGAGG 503 Query 631 CTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || || | | ||| ||||||||||| || || | ||| ||||||||||| Sbjct 502 TCCGAAGTGATACTGACGTGCAAATCGTTCATCTGAGTTGCCTATAGGGGCGA 450 >seq6573 Length=149 Score = 96.9 bits (106), Expect = 1e-17 Identities = 83/103 (81%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 382 GATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACAT 441 |||||||||| || | | | | || ||||||||| ||||||||||||||||||||||| Sbjct 120 GATGCTGGCGGAACGATGCTGATCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACAC 61 Query 442 CTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAG 484 | |||||||| ||||| |||||| | ||||| | |||||| Sbjct 60 GTGCGCGAGTGTCCGGGTGGCAAACCTGGGCGCGGAGTGAAAG 18 >seq64763 Length=187 Score = 91.5 bits (100), Expect = 6e-16 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 382 GATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACAT 441 |||||||||| || | | | | || |||||||| ||||||||||||||||||||||| Sbjct 30 GATGCTGGCGGAACGATGCTGATCGACCCGTCTTAAAACACGGACCAAGGAGTCTAACAC 89 Query 442 CTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAG 484 | |||||||| ||||| |||||| | ||||| | |||||| Sbjct 90 GTGCGCGAGTGTCCGGGTGGCAAACCTGGGCGCGAAGTGAAAG 132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2078446784050