Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20culbertsoni_20[genbank_20GCA_5F000826265.1_202015-01- 06] 72,411 sequences; 55,543,795 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq47537 102 2e-19 seq40930 102 2e-19 seq15306 102 2e-19 seq15207 98.7 3e-18 seq9070 98.7 3e-18 seq58876 93.3 1e-16 seq58616 93.3 1e-16 seq28302 93.3 1e-16 seq25121 93.3 1e-16 seq8154 93.3 1e-16 seq4836 93.3 1e-16 seq55258 91.5 4e-16 seq65361 86.0 2e-14 seq36934 86.0 2e-14 seq25560 86.0 2e-14 seq4854 84.2 7e-14 seq54957 82.4 2e-13 seq8591 82.4 2e-13 seq37926 78.8 3e-12 seq37376 77.0 1e-11 seq22659 77.0 1e-11 seq20993 77.0 1e-11 seq14563 77.0 1e-11 seq12581 77.0 1e-11 seq6446 75.2 3e-11 >seq47537 Length=127 Score = 102 bits (112), Expect = 2e-19 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 ||||||||||||||| |||||||||| || |||||| ||| ||||||||||| || Sbjct 107 TACGACCGCAAGGTTAAAACTCAAAGAAACTGACGGAAGATTGCATAAGCGGTGGAGTAT 48 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGA 104 ||||||||||| || ||||| || || |||||||| |||||| Sbjct 47 GTGGTTTAATTTGATATAACGCAAAAAATCTTACCAACTCTTGA 4 >seq40930 Length=127 Score = 102 bits (112), Expect = 2e-19 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 ||||||||||||||| |||||||||| || |||||| | | |||||||||||||| Sbjct 121 TACGACCGCAAGGTTAAAACTCAAAGAAACTGACGGAAGATTGTATAAGCGGTGGAGCAT 62 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGA 104 ||||||||||| || ||||| || || |||||||| |||||| Sbjct 61 GTGGTTTAATTTGATATAACGCAAAAAATCTTACCAACTCTTGA 18 >seq15306 Length=127 Score = 102 bits (112), Expect = 2e-19 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 ||||||||||||||| |||||||||| || |||||| || | ||||||||||| || Sbjct 105 TACGACCGCAAGGTTAAAACTCAAAGAAACTGACGGAAGATCGTATAAGCGGTGGAGTAT 46 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGA 104 ||||||||||| || ||||| || || |||||||| |||||| Sbjct 45 GTGGTTTAATTTGATATAACGCAAAAAATCTTACCAACTCTTGA 2 >seq15207 Length=127 Score = 98.7 bits (108), Expect = 3e-18 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 ||||||||||||||| |||||||||| || |||||| | | ||||||||||| || Sbjct 7 TACGACCGCAAGGTTAAAACTCAAAGAAACTGACGGAAGATTGTATAAGCGGTGGAGAAT 66 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGA 104 ||||||||||| || ||||| || || |||||||| |||||| Sbjct 67 GTGGTTTAATTTGATATAACGCAAAAAATCTTACCAACTCTTGA 110 >seq9070 Length=122 Score = 98.7 bits (108), Expect = 3e-18 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 ||||||||||||||| |||||||||| || |||||| | | ||||||||||| || Sbjct 7 TACGACCGCAAGGTTAAAACTCAAAGAAACTGACGGAAGATTGTATAAGCGGTGGAGGAT 66 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGA 104 ||||||||||| || ||||| || || |||||||| |||||| Sbjct 67 GTGGTTTAATTTGATATAACGCAAAAAATCTTACCAACTCTTGA 110 >seq58876 Length=127 Score = 93.3 bits (102), Expect = 1e-16 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 ||||||||||||||| |||||||||| || |||||| | | ||||||||||| || Sbjct 126 TACGACCGCAAGGTTAAAACTCAAAGAAACTGACGGAAGATTGTATAAGCGGTGGAGTAT 67 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGA 104 || |||||||| || ||||| || || |||||||| |||||| Sbjct 66 GTAGTTTAATTTGATATAACGCAAAAAATCTTACCAACTCTTGA 23 >seq58616 Length=127 Score = 93.3 bits (102), Expect = 1e-16 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 ||||||||||||||| |||||||||| || |||||| | | |||| |||||| || Sbjct 14 TACGACCGCAAGGTTAAAACTCAAAGAAACTGACGGAAGATTGTATAAGCAGTGGAGTAT 73 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGA 104 ||||||||||| || ||||| || || |||||||| |||||| Sbjct 74 GTGGTTTAATTTGATATAACGCAAAAAATCTTACCAACTCTTGA 117 >seq28302 Length=127 Score = 93.3 bits (102), Expect = 1e-16 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 ||||||||||||||| |||||||||| || |||||| | | ||||| ||||| || Sbjct 13 TACGACCGCAAGGTTAAAACTCAAAGAAACTGACGGAAGATTGTATAAGCGATGGAGTAT 72 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGA 104 ||||||||||| || ||||| || || |||||||| |||||| Sbjct 73 GTGGTTTAATTTGATATAACGCAAAAAATCTTACCAACTCTTGA 116 >seq25121 Length=127 Score = 93.3 bits (102), Expect = 1e-16 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 ||||||||||||||| |||||||||| || |||||| | | |||||||| || || Sbjct 10 TACGACCGCAAGGTTAAAACTCAAAGAAACTGACGGAAGATTGTATAAGCGGTGAAGTAT 69 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGA 104 ||||||||||| || ||||| || || |||||||| |||||| Sbjct 70 GTGGTTTAATTTGATATAACGCAAAAAATCTTACCAACTCTTGA 113 >seq8154 Length=127 Score = 93.3 bits (102), Expect = 1e-16 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 ||||||||||||||| |||||||||| || |||||| | ||||||||||| || Sbjct 106 TACGACCGCAAGGTTAAAACTCAAAGAAACTGACGGAAGATTATATAAGCGGTGGAGTAT 47 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGA 104 ||||||||||| || ||||| || || |||||||| |||||| Sbjct 46 GTGGTTTAATTTGATATAACGCAAAAAATCTTACCAACTCTTGA 3 >seq4836 Length=127 Score = 93.3 bits (102), Expect = 1e-16 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 ||||||||||||||| |||||||||| || |||||| | | ||||||||||| || Sbjct 4 TACGACCGCAAGGTTAAAACTCAAAGAAACTGACGGAAGATTGTATAAGCGGTGGAGTAT 63 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGA 104 |||||||||| || ||||| || || |||||||| |||||| Sbjct 64 ATGGTTTAATTTGATATAACGCAAAAAATCTTACCAACTCTTGA 107 >seq55258 Length=127 Score = 91.5 bits (100), Expect = 4e-16 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 2 ACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATG 61 |||||||||||||| |||||||||| || |||||| | | ||||||||||| ||| Sbjct 1 ACGACCGCAAGGTTAAAACTCAAAGAAACTGACGGAAGATTGTATAAGCGGTGGAGTATG 60 Query 62 TGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGA 104 ||| |||||| || ||||| || || |||||||| |||||| Sbjct 61 TGGGTTAATTTGATATAACGCAAAAAATCTTACCAACTCTTGA 103 >seq65361 Length=127 Score = 86.0 bits (94), Expect = 2e-14 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 ||||||||||||||| |||||||||| || ||||| | | ||||||||||| || Sbjct 29 TACGACCGCAAGGTTAAAACTCAAAGAAACTGACGAAAGATTGTATAAGCGGTGGAGTAT 88 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAA 97 ||||||||||| || ||||| || || |||||||| Sbjct 89 GTGGTTTAATTTGATATAACGCAAAAAATCTTACCAA 125 >seq36934 Length=127 Score = 86.0 bits (94), Expect = 2e-14 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 ||||||||||||||| |||||||||| || ||| || | | ||||||||||| || Sbjct 97 TACGACCGCAAGGTTAAAACTCAAAGAAACTGATGGAAGATTGTATAAGCGGTGGAGTAT 38 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAA 97 ||||||||||| || ||||| || || |||||||| Sbjct 37 GTGGTTTAATTTGATATAACGCAAAAAATCTTACCAA 1 >seq25560 Length=127 Score = 86.0 bits (94), Expect = 2e-14 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 ||||||||||||||| |||||||||| || |||| | | | ||||||||||| || Sbjct 30 TACGACCGCAAGGTTAAAACTCAAAGAAACTGACAGAAGATTGTATAAGCGGTGGAGTAT 89 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAA 97 ||||||||||| || ||||| || || |||||||| Sbjct 90 GTGGTTTAATTTGATATAACGCAAAAAATCTTACCAA 126 >seq4854 Length=98 Score = 84.2 bits (92), Expect = 7e-14 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 ||||||||||||||| |||||||||| || |||||| | | ||||||||||| || Sbjct 3 TACGACCGCAAGGTTAAAACTCAAAGAAACTGACGGAAGATTGTATAAGCGGTGGAGTAT 62 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCA 96 | ||||||||| || ||||| || || ||||||| Sbjct 63 GAGGTTTAATTTGATATAACGCAAAAAATCTTACCA 98 >seq54957 Length=106 Score = 82.4 bits (90), Expect = 2e-13 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 ||||||||||||||| |||||||||| || |||||| | | |||||| |||| || Sbjct 12 TACGACCGCAAGGTTAAAACTCAAAGAAACTGACGGAAGATTGTATAAGCGGAGGAGTAT 71 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACC 95 ||||||||||| || ||||| || || |||||| Sbjct 72 GTGGTTTAATTTGATATAACGCAAAAAATCTTACC 106 >seq8591 Length=127 Score = 82.4 bits (90), Expect = 2e-13 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 ||||||||||||||| |||||||||| || | |||| | | ||||||||||| || Sbjct 33 TACGACCGCAAGGTTAAAACTCAAAGAAACTAACGGAAGATTGTATAAGCGGTGGAGTAT 92 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACC 95 ||||||||||| || ||||| || || |||||| Sbjct 93 GTGGTTTAATTTGATATAACGCAAAAAATCTTACC 127 >seq37926 Length=127 Score = 78.8 bits (86), Expect = 3e-12 Identities = 93/126 (74%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 295 ggggACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGA 354 || || || |||||||||| ||| || ||| | ||||||||||||||| ||||||||| Sbjct 1 GGAGAAGAAGTCAAATCATTATGGCCTATATAAGTTGGGCTACACACGTACTACAATGGT 60 Query 355 CAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTC 414 | ||||| | | ||| ||| ||| || | ||| |||| ||| || || ||||| Sbjct 61 AATTACAATGTGAAGCAAAAACGCAAGTTTTAGCTAATCATTAAAAATTAACCTAAGTTC 120 Query 415 GGATTG 420 | |||| Sbjct 121 GAATTG 126 >seq37376 Length=127 Score = 77.0 bits (84), Expect = 1e-11 Identities = 72/92 (78%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 ||||||||||||||| |||||||||| | |||||| | | ||||||||||| || Sbjct 92 TACGACCGCAAGGTTAAAACTCAAAGAAGCTGACGGAAGATTGTATAAGCGGTGGAGTAT 33 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTT 92 ||||||||||| || ||||| || || ||| Sbjct 32 GTGGTTTAATTTGATATAACGCAAAAAATCTT 1 >seq22659 Length=125 Score = 77.0 bits (84), Expect = 1e-11 Identities = 74/95 (78%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 10 AAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAA 69 |||||| |||||||||| || |||||| | | ||||||||||| ||||||||||| Sbjct 1 AAGGTTAAAACTCAAAGAAACTGACGGAAGATTGTATAAGCGGTGGAGTATGTGGTTTAA 60 Query 70 TTCGAAGCAACGCGAAGAACCTTACCAAATCTTGA 104 || | ||||| || || |||||||| |||||| Sbjct 61 TTTAATATAACGCAAAAAATCTTACCAACTCTTGA 95 >seq20993 Length=127 Score = 77.0 bits (84), Expect = 1e-11 Identities = 69/87 (79%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 407 CTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTA 466 || |||||| |||| |||| || |||| ||||||| ||||||||||||||||| | Sbjct 103 CTAAGTTCGAATTGCTCTCTGAAAGTCGAGAGCATGAAGCCGGAATCGCTAGTAATCGCA 44 Query 467 GATCAGCATGCTACGGTGAATACGTTC 493 || || ||||| |||||||||| ||| Sbjct 43 GAATAGAATGCTGCGGTGAATACATTC 17 >seq14563 Length=127 Score = 77.0 bits (84), Expect = 1e-11 Identities = 69/87 (79%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 407 CTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTA 466 || |||||| |||| |||| || |||| |||||| ||||||||||||||||||| Sbjct 122 CTAAGTTCGAATTGCTCTCTGAAAGTCGAGAGCATGAAGTCGGAATCGCTAGTAATCGTA 63 Query 467 GATCAGCATGCTACGGTGAATACGTTC 493 || || ||||| |||||||||| ||| Sbjct 62 GAATAGAATGCTGCGGTGAATACATTC 36 >seq12581 Length=127 Score = 77.0 bits (84), Expect = 1e-11 Identities = 69/87 (79%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 407 CTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTA 466 || |||||| |||| |||| || |||| ||||||| ||||||||||||||||| | Sbjct 96 CTAAGTTCGAATTGCTCTCTGAAAGTCGAGAGTATGAAGTCGGAATCGCTAGTAATCGCA 37 Query 467 GATCAGCATGCTACGGTGAATACGTTC 493 || || ||||| |||||||||| ||| Sbjct 36 GAATAGAATGCTGCGGTGAATACATTC 10 >seq6446 Length=127 Score = 75.2 bits (82), Expect = 3e-11 Identities = 76/99 (77%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 295 ggggACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGA 354 || || || |||||||||| ||| || ||| | ||||||||||||||| |||||||||| Sbjct 5 GGAGAAGAAGTCAAATCATTATGGCCTATATAAGTTGGGCTACACACGTACTACAATGGA 64 Query 355 CAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATC 393 | |||| | | ||| ||| ||| || | ||| |||| Sbjct 65 AATCACAATGTGAAGCAAAAACGCAAGTTTTAGCTAATC 103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1502910938560