Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20culbertsoni_20[genbank_20GCA_5F000826265.1_202015-01- 06] 72,411 sequences; 55,543,795 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq17136 205 1e-50 seq64899 123 4e-26 seq68083 114 2e-23 seq57989 114 2e-23 seq67076 109 9e-22 seq46374 80.6 4e-13 >seq17136 Length=203 Score = 205 bits (226), Expect = 1e-50 Identities = 115/116 (99%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 143 TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAA 202 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 17 TATTTAGCAGGTTAAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCACTCCACCAA 76 Query 203 CTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 77 CTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 132 >seq64899 Length=139 Score = 123 bits (136), Expect = 4e-26 Identities = 68/68 (100%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 63 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 122 Query 76 AAACTTCC 83 |||||||| Sbjct 123 AAACTTCC 130 >seq68083 Length=5301 Score = 114 bits (126), Expect = 2e-23 Identities = 66/68 (97%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 319 TCAGTGTAGCACGTGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 260 Query 76 AAACTTCC 83 |||||||| Sbjct 259 AAACTTCC 252 >seq57989 Length=111 Score = 114 bits (126), Expect = 2e-23 Identities = 75/83 (90%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 34 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGA 93 |||||||||||||||||||||||||||||||||||||||||||||||||| || || | Sbjct 1 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGCTGACTAGG 60 Query 94 AGCCAATAGTCCCTCTAAGAAGC 116 |||| |||||||||||||||| Sbjct 61 CGCCAGCAGTCCCTCTAAGAAGC 83 >seq67076 Length=521 Score = 109 bits (120), Expect = 9e-22 Identities = 65/68 (96%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 498 TCAGTGTAGCACGTGTGCGGCCCAGAACATCTAAGGGCATAACAGACCTGTTATTGCCTC 439 Query 76 AAACTTCC 83 |||||||| Sbjct 438 AAACTTCC 431 >seq46374 Length=127 Score = 80.6 bits (88), Expect = 4e-13 Identities = 46/47 (98%), Gaps = 0/47 (0%) Strand=Plus/Minus Query 143 TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAA 189 ||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 47 TATTTAGCAGGTTAAGGTCTCGTTCGTTAACGGAATTAACCAGACAA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796241059491