Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20culbertsoni_20[genbank_20GCA_5F000826265.1_202015-01- 06] 72,411 sequences; 55,543,795 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq53019 354 1e-95 seq29969 127 3e-27 seq37131 104 4e-20 seq12265 102 1e-19 seq3174 102 1e-19 >seq53019 Length=220 Score = 354 bits (392), Expect = 1e-95 Identities = 207/214 (97%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 216 CATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTAT 157 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| Sbjct 156 TAGTGGGTGAACAATCCAACGCTTGGCGAATTCTGCTTCGCAATGATAGGAAGAGCCGAC 97 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 96 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 37 Query 212 TGTGGTAACTTTTCTGGCACCTCTAGCCTCAAAT 245 |||||||||||||||| |||||||||| |||||| Sbjct 36 TGTGGTAACTTTTCTGACACCTCTAGCTTCAAAT 3 >seq29969 Length=127 Score = 127 bits (140), Expect = 3e-27 Identities = 98/118 (83%), Gaps = 9/118 (8%) Strand=Plus/Plus Query 185 GCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAA 244 ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 1 GCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTTCAAA 60 Query 245 TTTCG---------AGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | || || ||||||||||||||||||| |||||| |||||||||| Sbjct 61 TCCCGAAATAAAAAAGACTCTAAAGGATCGATAGGCCATGCTTTCACAGTTTGTATTC 118 >seq37131 Length=121 Score = 104 bits (114), Expect = 4e-20 Identities = 86/106 (81%), Gaps = 8/106 (8%) Strand=Plus/Minus Query 196 ACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCG------ 249 |||||||||||||||||||||||||||||||| |||||||||| |||||| | Sbjct 121 ACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTTCAAATCCTGAAATAA 62 Query 250 --AGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 || ||||||||||||||||||| |||||| |||||||||| Sbjct 61 AAAGACTCTAAAGGATCGATAGGCCATGCTTTCACAGTTTGTATTC 16 >seq12265 Length=116 Score = 102 bits (112), Expect = 1e-19 Identities = 86/107 (80%), Gaps = 9/107 (8%) Strand=Plus/Minus Query 196 ACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCG------ 249 |||||||||||||||||||||||||||||||| |||||||||| |||||| | Sbjct 116 ACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTTCAAATCCTGAAATAA 57 Query 250 ---AGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 || ||||||||||||||||||| |||||| |||||||||| Sbjct 56 AAAAGACTCTAAAGGATCGATAGGCCATGCTTTCACAGTTTGTATTC 10 >seq3174 Length=136 Score = 102 bits (112), Expect = 1e-19 Identities = 58/59 (98%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 59 CATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 853781320416