Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20culbertsoni_20[genbank_20GCA_5F000826265.1_202015-01- 06] 72,411 sequences; 55,543,795 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq66702 109 1e-21 seq51349 107 4e-21 seq26542 104 5e-20 seq2869 104 5e-20 seq46636 100 6e-19 seq43354 100 6e-19 seq4464 98.7 2e-18 seq23822 96.9 7e-18 seq17464 95.1 3e-17 seq10678 95.1 3e-17 seq17655 91.5 3e-16 seq63907 89.7 1e-15 seq21488 89.7 1e-15 seq63976 87.8 4e-15 seq17755 87.8 4e-15 seq10085 87.8 4e-15 seq44974 86.0 1e-14 seq41359 86.0 1e-14 seq17268 86.0 1e-14 seq44338 84.2 5e-14 seq29608 84.2 5e-14 seq63505 82.4 2e-13 >seq66702 Length=185 Score = 109 bits (120), Expect = 1e-21 Identities = 132/173 (76%), Gaps = 5/173 (3%) Strand=Plus/Minus Query 17 CCTTCTT-TCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCC 75 |||||| |||| |||| |||| || ||||| |||||||||||||| | ||||||| Sbjct 170 CCTTCTGATCACCCACGTAACATTA-CTCGATCAAGCTTTCGCCCATTGCCAAATATTCT 112 Query 76 CCACTGCTGCCTCCCGTAGGAGTC-TGGACCGTGTCTCAGTTCCAGTGTGACTGATCATC 134 ||||||||||| | || || | ||| |||| | ||||| ||| ||| |||||||| Sbjct 111 CCACTGCTGCC-CTTTTAAAAGACTTGGGCCGT-TTTCAGTCCCAATGTAGCTGATCATT 54 Query 135 CTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTA 187 |||||| ||||| || | ||||||| |||| ||| ||||| || |||||| Sbjct 53 CTCTCAAACCAGCTAAGCATCGTCGGCTTGTTGAATAATTACTACAACAACTA 1 >seq51349 Length=127 Score = 107 bits (118), Expect = 4e-21 Identities = 101/125 (81%), Gaps = 3/125 (2%) Strand=Plus/Plus Query 45 GATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTC-TGGA 103 ||||| |||||||||||||||| ||||||| ||||||||||| | || || | ||| Sbjct 2 GATCAAGCTTTCGCCCATTGTCAAATATTCTCCACTGCTGCC-CTTTTAAAAGACTTGGG 60 Query 104 CCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTT 163 ||| || ||||| ||| |||| |||||||| |||||| ||||| || | ||||||| ||| Sbjct 61 CCG-GTTTCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCTT 119 Query 164 GGTGA 168 | ||| Sbjct 120 GTTGA 124 >seq26542 Length=127 Score = 104 bits (114), Expect = 5e-20 Identities = 101/126 (80%), Gaps = 3/126 (2%) Strand=Plus/Minus Query 52 CTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTC-TGGACCGTGTC 110 ||||||||||||||| ||||||| ||||||||||| | || || | ||| |||| | Sbjct 127 CTTTCGCCCATTGTCAAATATTCTCCACTGCTGCC-CTTTTAAAAGACTTGGGCCGT-TT 70 Query 111 TCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGC 170 ||||||||| |||| |||||||| |||||| ||||| || | ||||||| |||| ||| Sbjct 69 TCAGTTCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCTTGTTGAAT 10 Query 171 CATTAC 176 ||||| Sbjct 9 AATTAC 4 >seq2869 Length=127 Score = 104 bits (114), Expect = 5e-20 Identities = 102/128 (80%), Gaps = 3/128 (2%) Strand=Plus/Plus Query 42 CTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTC-T 100 || ||||| |||||||||||||||| ||||||| ||||||||||| | || || | | Sbjct 1 CTCGATCAAGCTTTCGCCCATTGTCAAATATTCTCCACTGCTGCC-CTTTTAAAAGACTT 59 Query 101 GGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGC 160 || | || | ||||| ||| |||| |||||||| |||||| ||||| || | ||||||| Sbjct 60 GGGCTGT-TTTCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGG 118 Query 161 CTTGGTGA 168 |||| ||| Sbjct 119 CTTGTTGA 126 >seq46636 Length=127 Score = 100 bits (110), Expect = 6e-19 Identities = 99/124 (80%), Gaps = 3/124 (2%) Strand=Plus/Minus Query 42 CTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTC-T 100 || ||||| |||||||||||||||| ||||||| ||||||||||| | || || | | Sbjct 123 CTCGATCAAGCTTTCGCCCATTGTCAAATATTCTCCACTGCTGCC-CTTTTAAAAGACTT 65 Query 101 GGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGC 160 | |||| | ||||| ||| |||| |||||||| |||||| ||||| || | ||||||| Sbjct 64 TGGCCGT-TTTCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGG 6 Query 161 CTTG 164 |||| Sbjct 5 CTTG 2 >seq43354 Length=127 Score = 100 bits (110), Expect = 6e-19 Identities = 99/124 (80%), Gaps = 3/124 (2%) Strand=Plus/Plus Query 42 CTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTC-T 100 || ||||| |||||||||||||||| ||||||| ||||||||||| | || || | | Sbjct 5 CTCGATCAAGCTTTCGCCCATTGTCAAATATTCTCCACTGCTGCC-CTTTTAAAAGACTT 63 Query 101 GGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGC 160 | |||| | ||||| ||| |||| |||||||| |||||| ||||| || | ||||||| Sbjct 64 AGGCCGT-TTTCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGG 122 Query 161 CTTG 164 |||| Sbjct 123 CTTG 126 >seq4464 Length=127 Score = 98.7 bits (108), Expect = 2e-18 Identities = 101/127 (80%), Gaps = 4/127 (3%) Strand=Plus/Plus Query 24 TCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCT 83 |||| |||| |||| || ||||| |||||||||||||||| ||||||| |||||||| Sbjct 1 TCACCCACGTAACATTA-CTCGATCAAGCTTTCGCCCATTGTCAAATATTCTCCACTGCT 59 Query 84 GCCTCCCGTAGGAGTC-TGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGA 142 ||| || || || | ||| |||| | ||||| ||| |||| |||||||| |||||| | Sbjct 60 GCC-CCTTTAAAAGACTTGGGCCGT-TTTCAGTCCCAATGTGGCTGATCATTCTCTCAAA 117 Query 143 CCAGTTA 149 |||| || Sbjct 118 CCAGCTA 124 >seq23822 Length=127 Score = 96.9 bits (106), Expect = 7e-18 Identities = 97/122 (80%), Gaps = 3/122 (2%) Strand=Plus/Minus Query 48 CAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTC-TGGACCG 106 || |||||||||||||||| ||||||| ||||||||||| | || || | ||| ||| Sbjct 127 CAAGCTTTCGCCCATTGTCAAATATTCTCCACTGCTGCC-CTTTTAAAAGACTTGGGCCG 69 Query 107 TGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGT 166 | | | ||| ||| |||| |||||||| |||||| ||||| || | ||||||| |||| | Sbjct 68 T-TTTTAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCTTGTT 10 Query 167 GA 168 || Sbjct 9 GA 8 >seq17464 Length=127 Score = 95.1 bits (104), Expect = 3e-17 Identities = 93/116 (80%), Gaps = 3/116 (3%) Strand=Plus/Plus Query 42 CTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTG-CCTCCCGTAGGAGTCT 100 || ||||| |||||||||||||||| ||||||| ||||||||| ||| | | || | | Sbjct 14 CTCGATCAAGCTTTCGCCCATTGTCAAATATTCTCCACTGCTGCCCTTTTGAAAGACT-T 72 Query 101 GGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCG 156 || |||| | ||||| ||| |||| |||||||| |||||| ||||| || | |||| Sbjct 73 GGGCCGT-TTTCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCG 127 >seq10678 Length=127 Score = 95.1 bits (104), Expect = 3e-17 Identities = 100/128 (78%), Gaps = 3/128 (2%) Strand=Plus/Minus Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCT-GGACCGTGTCTCAGTTCCA 119 |||||| ||||||| ||||||||||| | || || || || |||| | ||||| ||| Sbjct 127 ATTGTCAAATATTCTCCACTGCTGCC-CTTTTAAAAGACTTGGGCCGTTT-TCAGTCCCA 70 Query 120 GTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTC 179 ||||||||||||| |||||| ||||| || | ||||||| |||| ||| ||||| | Sbjct 69 ATGTGACTGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCTTGTTGAATAATTACTAC 10 Query 180 ACCAACTA 187 | |||||| Sbjct 9 AACAACTA 2 >seq17655 Length=127 Score = 91.5 bits (100), Expect = 3e-16 Identities = 97/124 (78%), Gaps = 3/124 (2%) Strand=Plus/Plus Query 54 TTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTC-TGGACCGTGTCTC 112 ||||||||||||| ||||||| ||||||||||| | || || | ||| |||| | || Sbjct 1 TTCGCCCATTGTCAAATATTCTCCACTGCTGCC-CTTTTAAAAGACTTGGGCCGT-TTTC 58 Query 113 AGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCA 172 ||| | | |||| |||||||| |||||| ||||| || | ||||||| |||| ||| | Sbjct 59 AGTCCTAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCTTGTTGAATAA 118 Query 173 TTAC 176 |||| Sbjct 119 TTAC 122 >seq63907 Length=127 Score = 89.7 bits (98), Expect = 1e-15 Identities = 96/123 (78%), Gaps = 3/123 (2%) Strand=Plus/Minus Query 55 TCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTC-TGGACCGTGTCTCA 113 |||||||||||| ||||||| ||||||||||| | || || | ||| |||| | ||| Sbjct 127 TCGCCCATTGTCAAATATTCTCCACTGCTGCC-CTTTTAAAAGACTTGGGCCGT-TTTCA 70 Query 114 GTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCAT 173 || || |||| |||||||| |||||| ||||| || | ||||||| |||| ||| || Sbjct 69 GTCCCGATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCTTGTTGAATAAT 10 Query 174 TAC 176 ||| Sbjct 9 TAC 7 >seq21488 Length=127 Score = 89.7 bits (98), Expect = 1e-15 Identities = 99/127 (78%), Gaps = 4/127 (3%) Strand=Plus/Minus Query 24 TCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCT 83 |||| |||| |||| || ||||| |||||||||||||||| ||||||| |||||||| Sbjct 126 TCACCCACGTAACATTA-CTCGATCAAGCTTTCGCCCATTGTCAAATATTCTCCACTGCT 68 Query 84 GCC-TCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGA 142 ||| | | || | ||| |||| | ||||| ||| |||| |||||||| |||||| | Sbjct 67 GCCATTTTAAAAGACT-TGGGCCGT-TTTCAGTCCCAATGTGGCTGATCATTCTCTCAAA 10 Query 143 CCAGTTA 149 |||| || Sbjct 9 CCAGCTA 3 >seq63976 Length=127 Score = 87.8 bits (96), Expect = 4e-15 Identities = 99/129 (77%), Gaps = 3/129 (2%) Strand=Plus/Minus Query 60 CATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTC-TGGACCGTGTCTCAGTTCC 118 ||||||| ||||||| ||||||||||| | || || | ||| |||| | ||||| || Sbjct 127 CATTGTCAAATATTCTCCACTGCTGCC-CTTTTAAAAGACTTGGGCCGT-TTTCAGTCCC 70 Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCT 178 | ||| |||||||| |||||| ||||| || | ||||||| |||| ||| ||||| Sbjct 69 AATGTTGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCTTGTTGAATAATTACTA 10 Query 179 CACCAACTA 187 || |||||| Sbjct 9 CAACAACTA 1 >seq17755 Length=127 Score = 87.8 bits (96), Expect = 4e-15 Identities = 99/129 (77%), Gaps = 3/129 (2%) Strand=Plus/Plus Query 58 CCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTC-TGGACCGTGTCTCAGTT 116 ||||||||| ||||||| ||||||||||| | || || | ||| |||| | ||||| Sbjct 1 CCCATTGTCAAATATTCTCCACTGCTGCC-CTTTTAAAAGACTTGGGCCGT-TTTCAGTC 58 Query 117 CCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTAC 176 ||| | || |||||||| |||||| ||||| || | ||||||| |||| ||| ||||| Sbjct 59 CCAATATGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCTTGTTGAATAATTAC 118 Query 177 CTCACCAAC 185 || |||| Sbjct 119 TACAACAAC 127 >seq10085 Length=127 Score = 87.8 bits (96), Expect = 4e-15 Identities = 99/129 (77%), Gaps = 3/129 (2%) Strand=Plus/Minus Query 57 GCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTC-TGGACCGTGTCTCAGT 115 |||||||||| ||||||| ||||||||||| | || || | ||| |||| | ||||| Sbjct 127 GCCCATTGTCAAATATTCTCCACTGCTGCC-CTTTTAAAAGACTTGGGCCGT-TTTCAGT 70 Query 116 TCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTA 175 ||| ||| |||||||| |||||| ||||| || | ||||||| |||| ||| |||| Sbjct 69 CCCAACGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCTTGTTGAATAATTA 10 Query 176 CCTCACCAA 184 | || ||| Sbjct 9 CTACAACAA 1 >seq44974 Length=127 Score = 86.0 bits (94), Expect = 1e-14 Identities = 101/130 (78%), Gaps = 5/130 (4%) Strand=Plus/Minus Query 17 CCTTCTT-TCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCC 75 |||||| |||| |||| |||| || ||||| |||||||||||||||| ||||||| Sbjct 127 CCTTCTGATCACCCACGTAACATTA-CTCGATCAAGCTTTCGCCCATTGTCAAATATTCT 69 Query 76 CCACTGCTGCCTCCCGTAGGAGTC-TGGACCGTGTCTCAGTTCCAGTGTGACTGATCATC 134 |||| |||||| | || || | ||| |||| | ||||| ||| |||| |||||||| Sbjct 68 CCACCGCTGCC-CTTTTAAAAGACTTGGGCCGT-TTTCAGTCCCAATGTGGCTGATCATT 11 Query 135 CTCTCAGACC 144 |||||| ||| Sbjct 10 CTCTCAAACC 1 >seq41359 Length=127 Score = 86.0 bits (94), Expect = 1e-14 Identities = 96/123 (78%), Gaps = 4/123 (3%) Strand=Plus/Plus Query 24 TCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCT 83 |||| |||| |||| || ||||| |||||||||||||||| ||||||| ||||| || Sbjct 8 TCACCCACGTAACATTA-CTCGATCAAGCTTTCGCCCATTGTCAAATATTCTCCACTACT 66 Query 84 GCCTCCCGTAGGAGTC-TGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGA 142 ||| | || || | ||| |||| | ||||| ||| |||| |||||||| |||||| | Sbjct 67 GCC-CTTTTAAAAGACTTGGGCCGT-TTTCAGTCCCAATGTGGCTGATCATTCTCTCAAA 124 Query 143 CCA 145 ||| Sbjct 125 CCA 127 >seq17268 Length=127 Score = 86.0 bits (94), Expect = 1e-14 Identities = 98/128 (77%), Gaps = 3/128 (2%) Strand=Plus/Plus Query 68 AATATTCCCCACTGCTGCCTCCCGTAGGAGTC-TGGACCGTGTCTCAGTTCCAGTGTGAC 126 ||||||| ||||||||||| | || || | ||| |||| | ||||| ||| |||| | Sbjct 2 AATATTCTCCACTGCTGCC-CTTTTAAAAGACTTGGGCCGT-TTTCAGTCCCAATGTGGC 59 Query 127 TGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACT 186 |||| || |||||| ||||| || | ||||||| |||| ||| ||||| || ||||| Sbjct 60 TGATTATTCTCTCAAACCAGCTAAGCATCGTCGGCTTGTTGAATAATTACTACAACAACT 119 Query 187 AGCTAATC 194 | |||||| Sbjct 120 ACCTAATC 127 >seq44338 Length=127 Score = 84.2 bits (92), Expect = 5e-14 Identities = 98/126 (78%), Gaps = 5/126 (4%) Strand=Plus/Plus Query 17 CCTTCTT-TCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCC 75 |||||| |||| |||| |||| || ||||| |||||||||||||||| ||||||| Sbjct 4 CCTTCTGATCACCCACGTAACATTA-CTCGATCAAGCTTTCGCCCATTGTCAAATATTCT 62 Query 76 CCACTGCTGCCTCCCGTAGGAGTC-TGGACCGTGTCTCAGTTCCAGTGTGACTGATCATC 134 | ||||||||| | || || | ||| |||| | ||||| ||| |||| |||||||| Sbjct 63 CTACTGCTGCC-CTTTTAAAAGACTTGGGCCGT-TTTCAGTCCCAATGTGGCTGATCATT 120 Query 135 CTCTCA 140 |||||| Sbjct 121 CTCTCA 126 >seq29608 Length=127 Score = 84.2 bits (92), Expect = 5e-14 Identities = 98/126 (78%), Gaps = 5/126 (4%) Strand=Plus/Minus Query 17 CCTTCTT-TCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCC 75 |||||| |||| |||| |||| || ||||| |||||||||||||||| ||||||| Sbjct 125 CCTTCTGATCACCCACGTAACATTA-CTCGATCAAGCTTTCGCCCATTGTCAAATATTCT 67 Query 76 CCACTGCTGCCTCCCGTAGGAGTC-TGGACCGTGTCTCAGTTCCAGTGTGACTGATCATC 134 || |||||||| | || || | ||| |||| | ||||| ||| |||| |||||||| Sbjct 66 CCGCTGCTGCC-CTTTTAAAAGACTTGGGCCGT-TTTCAGTCCCAATGTGGCTGATCATT 9 Query 135 CTCTCA 140 |||||| Sbjct 8 CTCTCA 3 >seq63505 Length=127 Score = 82.4 bits (90), Expect = 2e-13 Identities = 98/129 (76%), Gaps = 3/129 (2%) Strand=Plus/Plus Query 64 GTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTC-TGGACCGTGTCTCAGTTCCAGTG 122 ||| ||||||| ||||||||||| | || || | ||| |||| | ||||| ||| || Sbjct 1 GTCAAATATTCTCCACTGCTGCC-CTTTTAAAAGACTTGGGCCGT-TTTCAGTCCCAATG 58 Query 123 TGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACC 182 || || ||||| |||||| ||||| || | ||||||| |||| ||| ||||| || | Sbjct 59 TGGCTAATCATTCTCTCAAACCAGCTAAGCATCGTCGGCTTGTTGAATAATTACTACAAC 118 Query 183 AACTAGCTA 191 ||||| ||| Sbjct 119 AACTACCTA 127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071223754080