Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20culbertsoni_20[genbank_20GCA_5F000826265.1_202015-01- 06] 72,411 sequences; 55,543,795 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq25725 84.2 8e-14 seq42173 82.4 3e-13 seq54289 80.6 1e-12 seq53939 80.6 1e-12 seq43653 80.6 1e-12 seq18316 80.6 1e-12 seq53938 77.0 1e-11 seq45292 77.0 1e-11 seq32070 77.0 1e-11 seq18634 77.0 1e-11 seq65999 75.2 4e-11 seq18956 75.2 4e-11 >seq25725 Length=127 Score = 84.2 bits (92), Expect = 8e-14 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 135 ACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTC 194 ||||| |||||||| |||||| ||| || ||||| ||| ||| |||||| | ||||| Sbjct 10 ACGCTCTACCTAAATAGATTTCGTAGAGTACTAGCTAACACTAAGCTTGATTAGACTTTC 69 Query 195 ACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCA 250 ||||||| | || | ||||||| | | | |||| || |||||||| |||| || Sbjct 70 ACCCCTAGCTACTGCTCATCCCGGTATTATGCAACATACATGGGTTCGATCCTTCA 125 >seq42173 Length=127 Score = 82.4 bits (90), Expect = 3e-13 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 135 ACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTC 194 ||||| |||||||| |||||| ||| || ||||| ||| ||| ||||| ||||||| Sbjct 115 ACGCTCTACCTAAATAGATTTCGTAGAGTACTAGCTAACACTAAGCTTGATCAGCCTTTC 56 Query 195 ACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCT 247 ||||||| | || | ||||||| | | | |||| || |||||||| |||| Sbjct 55 ACCCCTAGCTACTGCTCATCCCGGTATTATGCAACATACATGGGTTCGATCCT 3 >seq54289 Length=105 Score = 80.6 bits (88), Expect = 1e-12 Identities = 67/82 (82%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 135 ACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTC 194 ||||| |||||||| |||||| ||| |||||||| ||| ||| |||||| ||||||| Sbjct 11 ACGCTCTACCTAAATAGATTTCGTAGAGTACCAGCTAACACTAAGCTTGATTAGCCTTTC 70 Query 195 ACCCCTATCCACAGGTCATCCC 216 ||||||| | || | ||||||| Sbjct 71 ACCCCTAGCTACTGCTCATCCC 92 >seq53939 Length=127 Score = 80.6 bits (88), Expect = 1e-12 Identities = 67/82 (82%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 135 ACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTC 194 ||||| |||||||| |||||| |||||| ||||| ||| ||| |||||| ||||||| Sbjct 36 ACGCTCTACCTAAATAGATTTCGTAGAGAACTAGCTAACACTAAGCTTGATTAGCCTTTC 95 Query 195 ACCCCTATCCACAGGTCATCCC 216 ||||||| | || | ||||||| Sbjct 96 ACCCCTAGCTACTGCTCATCCC 117 >seq43653 Length=127 Score = 80.6 bits (88), Expect = 1e-12 Identities = 82/107 (77%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 144 CTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATC 203 |||||| |||||| ||| || ||||| ||| ||| |||||| |||||||||||||| | Sbjct 1 CTAAATAGATTTCGTAGAGTACTAGCTAACACTAAGCTTGATTAGCCTTTCACCCCTAGC 60 Query 204 CACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCA 250 || | ||||||| | | | |||| || |||||||| |||| || Sbjct 61 TACCGCTCATCCCGGTATTATGCAACATACATGGGTTCGATCCTTCA 107 >seq18316 Length=127 Score = 80.6 bits (88), Expect = 1e-12 Identities = 85/112 (76%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 135 ACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTC 194 ||||| |||||||| |||||| ||| || ||||| ||| ||| || ||| ||||||| Sbjct 112 ACGCTCTACCTAAATAGATTTCGTAGAGTACTAGCTAACACTAAGCTTAATTAGCCTTTC 53 Query 195 ACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCC 246 ||||||| | || | ||||||| | | | |||| || |||||||| ||| Sbjct 52 ACCCCTAGCTACTGCTCATCCCGGTATTATGCAACATACATGGGTTCGATCC 1 >seq53938 Length=127 Score = 77.0 bits (84), Expect = 1e-11 Identities = 66/82 (80%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 135 ACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTC 194 ||||| |||||||| |||||| ||| || ||||| ||| ||| |||||| ||||||| Sbjct 36 ACGCTCTACCTAAATAGATTTCGTAGAGGACTAGCTAACACTAAGCTTGATTAGCCTTTC 95 Query 195 ACCCCTATCCACAGGTCATCCC 216 ||||||| | || | ||||||| Sbjct 96 ACCCCTAGCTACTGCTCATCCC 117 >seq45292 Length=127 Score = 77.0 bits (84), Expect = 1e-11 Identities = 66/82 (80%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 135 ACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTC 194 ||||| |||||||| |||||| ||| || ||||| ||| ||| |||||| ||||||| Sbjct 87 ACGCTCTACCTAAATAGATTTCGCAGAGTACTAGCTAACACTAAGCTTGATTAGCCTTTC 28 Query 195 ACCCCTATCCACAGGTCATCCC 216 ||||||| | || | ||||||| Sbjct 27 ACCCCTAGCTACTGCTCATCCC 6 >seq32070 Length=127 Score = 77.0 bits (84), Expect = 1e-11 Identities = 66/82 (80%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 135 ACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTC 194 ||||| |||||||| |||||| ||| || ||||| ||| ||| |||||| ||||||| Sbjct 92 ACGCTCTACCTAAATAGATTTCGTAGAGCACTAGCTAACACTAAGCTTGATTAGCCTTTC 33 Query 195 ACCCCTATCCACAGGTCATCCC 216 ||||||| | || | ||||||| Sbjct 32 ACCCCTAGCTACTGCTCATCCC 11 >seq18634 Length=127 Score = 77.0 bits (84), Expect = 1e-11 Identities = 80/105 (76%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 146 AAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCA 205 |||| |||||| ||| || ||||| ||| ||| |||||| |||||||||||||| | | Sbjct 127 AAATAGATTTCGTAGAGTACTAGCTAACACTAAGCTTGATTAGCCTTTCACCCCTAGCTA 68 Query 206 CAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCA 250 | | ||||||| | | | |||| || |||||||| |||| || Sbjct 67 CTGTTCATCCCGGTATTATGCAACATACATGGGTTCGATCCTTCA 23 >seq65999 Length=127 Score = 75.2 bits (82), Expect = 4e-11 Identities = 80/106 (75%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 145 TAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCC 204 ||||| |||||| ||| || ||||| ||| ||| |||||| |||||||||||||| | Sbjct 1 TAAATAGATTTCGTAGAGTACTAGCTAACACTAAGCTTGATTAGCCTTTCACCCCTAGCT 60 Query 205 ACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCA 250 || ||||||| | | | |||| || |||||||| |||| || Sbjct 61 ACTACTCATCCCGGTATTATGCAACATACATGGGTTCGATCCTTCA 106 >seq18956 Length=127 Score = 75.2 bits (82), Expect = 4e-11 Identities = 71/91 (78%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 160 GAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTC 219 ||| || ||||| ||| ||| |||||| |||||||||||||| | || | ||||||| | Sbjct 5 GAGTACTAGCTAACACTAAGCTTGATTAGCCTTTCACCCCTAGCTACTGCTCATCCCGGC 64 Query 220 AGTTTTCAACCTAAGTGGGTTCGGTCCTCCA 250 | | | |||| || |||||||| |||| || Sbjct 65 ATTATGCAACATACATGGGTTCGATCCTTCA 95 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1816283857664