Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20culbertsoni_20[genbank_20GCA_5F000826265.1_202015-01- 06] 72,411 sequences; 55,543,795 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq51349 86.0 1e-14 seq46636 80.6 5e-13 seq43354 80.6 5e-13 seq2869 80.6 5e-13 seq33831 78.8 2e-12 seq66702 77.0 6e-12 seq55274 77.0 6e-12 seq26542 77.0 6e-12 seq23822 77.0 6e-12 seq17268 77.0 6e-12 seq17655 75.2 2e-11 seq4464 75.2 2e-11 seq63907 73.4 8e-11 seq40232 73.4 8e-11 seq17755 73.4 8e-11 seq10085 73.4 8e-11 >seq51349 Length=127 Score = 86.0 bits (94), Expect = 1e-14 Identities = 95/123 (77%), Gaps = 3/123 (2%) Strand=Plus/Plus Query 12 ATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT-GGGC 70 |||| | |||| |||||||| ||||| | ||||||||||| | || || || |||| Sbjct 3 ATCAAGCTTTCGCCCATTGTCAAATATTCTCCACTGCTGCC-CTTTTAAAAGACTTGGGC 61 Query 71 CGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTG 130 || || |||||||||||||||| | ||| |||||| || |||| |||||||||||| Sbjct 62 CG-GTTTCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCTTG 120 Query 131 GTG 133 || Sbjct 121 TTG 123 >seq46636 Length=127 Score = 80.6 bits (88), Expect = 5e-13 Identities = 92/120 (77%), Gaps = 3/120 (3%) Strand=Plus/Minus Query 12 ATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTG-GGC 70 |||| | |||| |||||||| ||||| | ||||||||||| | || || || ||| Sbjct 119 ATCAAGCTTTCGCCCATTGTCAAATATTCTCCACTGCTGCC-CTTTTAAAAGACTTTGGC 61 Query 71 CGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTG 130 ||| | |||||||||||||||| | ||| |||||| || |||| |||||||||||| Sbjct 60 CGTTT-TCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCTTG 2 >seq43354 Length=127 Score = 80.6 bits (88), Expect = 5e-13 Identities = 92/120 (77%), Gaps = 3/120 (3%) Strand=Plus/Plus Query 12 ATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTG-GGC 70 |||| | |||| |||||||| ||||| | ||||||||||| | || || || ||| Sbjct 9 ATCAAGCTTTCGCCCATTGTCAAATATTCTCCACTGCTGCC-CTTTTAAAAGACTTAGGC 67 Query 71 CGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTG 130 ||| | |||||||||||||||| | ||| |||||| || |||| |||||||||||| Sbjct 68 CGTTT-TCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCTTG 126 >seq2869 Length=127 Score = 80.6 bits (88), Expect = 5e-13 Identities = 94/123 (76%), Gaps = 3/123 (2%) Strand=Plus/Plus Query 12 ATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT-GGGC 70 |||| | |||| |||||||| ||||| | ||||||||||| | || || || |||| Sbjct 5 ATCAAGCTTTCGCCCATTGTCAAATATTCTCCACTGCTGCC-CTTTTAAAAGACTTGGGC 63 Query 71 CGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTG 130 || | |||||||||||||||| | ||| |||||| || |||| |||||||||||| Sbjct 64 TGTTT-TCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCTTG 122 Query 131 GTG 133 || Sbjct 123 TTG 125 >seq33831 Length=127 Score = 78.8 bits (86), Expect = 2e-12 Identities = 75/95 (79%), Gaps = 1/95 (1%) Strand=Plus/Plus Query 66 TGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCG 125 |||||||| | |||||||||||||||| | ||| |||||| || ||||| ||||||| Sbjct 15 TGGGCCGTTT-TCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTACGCATCGTCG 73 Query 126 GCTTGGTGGGCTATTATCTCACCAACTACCTAATC 160 ||||| || |||| || ||||||||||||| Sbjct 74 GCTTGTTGAATAATTACTACAACAACTACCTAATC 108 >seq66702 Length=185 Score = 77.0 bits (84), Expect = 6e-12 Identities = 93/123 (76%), Gaps = 3/123 (2%) Strand=Plus/Minus Query 12 ATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT-GGGC 70 |||| | |||| ||||||| ||||| | ||||||||||| | || || || |||| Sbjct 141 ATCAAGCTTTCGCCCATTGCCAAATATTCTCCACTGCTGCC-CTTTTAAAAGACTTGGGC 83 Query 71 CGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTG 130 ||| | ||||||||||||| || | ||| |||||| || |||| |||||||||||| Sbjct 82 CGTTT-TCAGTCCCAATGTAGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCTTG 24 Query 131 GTG 133 || Sbjct 23 TTG 21 >seq55274 Length=127 Score = 77.0 bits (84), Expect = 6e-12 Identities = 74/94 (79%), Gaps = 1/94 (1%) Strand=Plus/Minus Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 ||||||| | |||||||||||||||| | ||| |||||| || |||| |||||||| Sbjct 127 GGGCCGTTT-TCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGG 69 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAATC 160 ||||||| |||| || ||||||||||||| Sbjct 68 CTTGGTGAATAATTACTACAACAACTACCTAATC 35 >seq26542 Length=127 Score = 77.0 bits (84), Expect = 6e-12 Identities = 89/116 (77%), Gaps = 3/116 (3%) Strand=Plus/Minus Query 19 TTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT-GGGCCGTGTCT 77 |||| |||||||| ||||| | ||||||||||| | || || || ||||||| | | Sbjct 126 TTTCGCCCATTGTCAAATATTCTCCACTGCTGCC-CTTTTAAAAGACTTGGGCCGTTT-T 69 Query 78 CAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTG 133 |||| |||||||||| | ||| |||||| || |||| |||||||||||| || Sbjct 68 CAGTTCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCTTGTTG 13 >seq23822 Length=127 Score = 77.0 bits (84), Expect = 6e-12 Identities = 89/116 (77%), Gaps = 3/116 (3%) Strand=Plus/Minus Query 19 TTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT-GGGCCGTGTCT 77 |||| |||||||| ||||| | ||||||||||| | || || || ||||||| | | Sbjct 122 TTTCGCCCATTGTCAAATATTCTCCACTGCTGCC-CTTTTAAAAGACTTGGGCCGTTTTT 64 Query 78 CAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTG 133 |||||||||||||| | ||| |||||| || |||| |||||||||||| || Sbjct 63 -AGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCTTGTTG 9 >seq17268 Length=127 Score = 77.0 bits (84), Expect = 6e-12 Identities = 96/128 (75%), Gaps = 3/128 (2%) Strand=Plus/Plus Query 34 AATATCCCCCACTGCTGCCTCCCGTAGGAGTCT-GGGCCGTGTCTCAGTCCCAATGTGGC 92 ||||| | ||||||||||| | || || || ||||||| | |||||||||||||||| Sbjct 2 AATATTCTCCACTGCTGCC-CTTTTAAAAGACTTGGGCCGTTT-TCAGTCCCAATGTGGC 59 Query 93 CGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACT 152 | | | |||||| || |||| |||||||||||| || |||| || ||||| Sbjct 60 TGATTATTCTCTCAAACCAGCTAAGCATCGTCGGCTTGTTGAATAATTACTACAACAACT 119 Query 153 ACCTAATC 160 |||||||| Sbjct 120 ACCTAATC 127 >seq17655 Length=127 Score = 75.2 bits (82), Expect = 2e-11 Identities = 88/115 (77%), Gaps = 3/115 (3%) Strand=Plus/Plus Query 20 TTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT-GGGCCGTGTCTC 78 ||| |||||||| ||||| | ||||||||||| | || || || ||||||| | || Sbjct 1 TTCGCCCATTGTCAAATATTCTCCACTGCTGCC-CTTTTAAAAGACTTGGGCCGTTT-TC 58 Query 79 AGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTG 133 ||||| |||||||| | ||| |||||| || |||| |||||||||||| || Sbjct 59 AGTCCTAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCTTGTTG 113 >seq4464 Length=127 Score = 75.2 bits (82), Expect = 2e-11 Identities = 82/105 (78%), Gaps = 3/105 (3%) Strand=Plus/Plus Query 12 ATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTC-TGGGC 70 |||| | |||| |||||||| ||||| | ||||||||||| || || || | ||||| Sbjct 22 ATCAAGCTTTCGCCCATTGTCAAATATTCTCCACTGCTGCC-CCTTTAAAAGACTTGGGC 80 Query 71 CGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTA 115 ||| | |||||||||||||||| | ||| |||||| || |||| Sbjct 81 CGT-TTTCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTA 124 >seq63907 Length=127 Score = 73.4 bits (80), Expect = 8e-11 Identities = 87/114 (76%), Gaps = 3/114 (3%) Strand=Plus/Minus Query 21 TCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT-GGGCCGTGTCTCA 79 || |||||||| ||||| | ||||||||||| | || || || ||||||| | ||| Sbjct 127 TCGCCCATTGTCAAATATTCTCCACTGCTGCC-CTTTTAAAAGACTTGGGCCGTTT-TCA 70 Query 80 GTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTG 133 ||||| ||||||| | ||| |||||| || |||| |||||||||||| || Sbjct 69 GTCCCGATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCTTGTTG 16 >seq40232 Length=127 Score = 73.4 bits (80), Expect = 8e-11 Identities = 74/95 (78%), Gaps = 1/95 (1%) Strand=Plus/Plus Query 66 TGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCG 125 |||||||| | |||||||||||||||| | ||| |||||| || |||| ||||||| Sbjct 13 TGGGCCGTTT-TCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGTATCGTCG 71 Query 126 GCTTGGTGGGCTATTATCTCACCAACTACCTAATC 160 ||||| || |||| || ||||||||||||| Sbjct 72 GCTTGTTGAATAATTACTACAACAACTACCTAATC 106 >seq17755 Length=127 Score = 73.4 bits (80), Expect = 8e-11 Identities = 85/111 (77%), Gaps = 3/111 (3%) Strand=Plus/Plus Query 24 CCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT-GGGCCGTGTCTCAGTC 82 |||||||| ||||| | ||||||||||| | || || || ||||||| | |||||| Sbjct 1 CCCATTGTCAAATATTCTCCACTGCTGCC-CTTTTAAAAGACTTGGGCCGTTT-TCAGTC 58 Query 83 CCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTG 133 ||||| |||| | ||| |||||| || |||| |||||||||||| || Sbjct 59 CCAATATGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCTTGTTG 109 >seq10085 Length=127 Score = 73.4 bits (80), Expect = 8e-11 Identities = 85/111 (77%), Gaps = 3/111 (3%) Strand=Plus/Minus Query 24 CCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT-GGGCCGTGTCTCAGTC 82 |||||||| ||||| | ||||||||||| | || || || ||||||| | |||||| Sbjct 126 CCCATTGTCAAATATTCTCCACTGCTGCC-CTTTTAAAAGACTTGGGCCGTTT-TCAGTC 69 Query 83 CCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTG 133 |||| ||||| | ||| |||||| || |||| |||||||||||| || Sbjct 68 CCAACGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCTTGTTG 18 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 997677048576