Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20culbertsoni_20[genbank_20GCA_5F000826265.1_202015-01- 06] 72,411 sequences; 55,543,795 total letters Query= AAMG01001851.1 Length=140 Score E Sequences producing significant alignments: (Bits) Value seq30636 78.8 7e-13 seq65317 77.0 2e-12 seq46559 73.4 3e-11 seq44847 73.4 3e-11 seq56624 71.6 1e-10 seq43888 71.6 1e-10 seq42300 71.6 1e-10 seq3063 71.6 1e-10 >seq30636 Length=127 Score = 78.8 bits (86), Expect = 7e-13 Identities = 85/113 (75%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 ||||||||||||||| ||| || |||||||||| | | | ||||||||||| || Sbjct 6 TACCTTTTATCCGTTAAGCAATAGCCCTTCCATACGGCACTATTGGATCACTATGGCCAA 65 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATT 113 |||||| |||| || | ||| |||| || ||||||| ||||| ||||| Sbjct 66 CTTTCGTCTCTGATCGATCTGTCAATCTCTCAGTCAAGCAATCTTTTACCATT 118 >seq65317 Length=127 Score = 77.0 bits (84), Expect = 2e-12 Identities = 83/110 (75%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 4 CTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTGCTT 63 |||||||||||| ||| || |||||||||| | | | ||||||||||| || ||| Sbjct 127 CTTTTATCCGTTAAGCAATAGCCCTTCCATACGGCACTATTGGATCACTATGGCCGACTT 68 Query 64 TCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATT 113 |||| |||| || | ||| |||| || ||||||| ||||| ||||| Sbjct 67 TCGCCTCTGATCGATCTGTCAATCTCTCAGTCAAGCAATCTTTTACCATT 18 >seq46559 Length=127 Score = 73.4 bits (80), Expect = 3e-11 Identities = 84/113 (74%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 ||||||||||||||| ||| || |||||||||| | | | ||||||||||| | Sbjct 120 TACCTTTTATCCGTTAAGCAATAGCCCTTCCATACGGCACTATTGGATCACTATGGTCGA 61 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATT 113 |||||| |||| || | ||| |||| || ||||||| ||||| ||||| Sbjct 60 CTTTCGTCTCTGATCGATCTGTCAATCTCTCAGTCAAGCAATCTTTTACCATT 8 >seq44847 Length=127 Score = 73.4 bits (80), Expect = 3e-11 Identities = 84/113 (74%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 ||||||||||||||| ||| || |||||||||| | | | ||||||||||| | Sbjct 121 TACCTTTTATCCGTTAAGCAATAGCCCTTCCATACGGCACTATTGGATCACTATGGCTGA 62 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATT 113 |||||| |||| || | ||| |||| || ||||||| ||||| ||||| Sbjct 61 CTTTCGTCTCTGATCGATCTGTCAATCTCTCAGTCAAGCAATCTTTTACCATT 9 >seq56624 Length=127 Score = 71.6 bits (78), Expect = 1e-10 Identities = 81/109 (74%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 5 TTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTGCTTT 64 ||||||||||| ||| || |||||||||| | | | ||||||||||| || |||| Sbjct 1 TTTTATCCGTTAAGCAATAGCCCTTCCATACGGCACTATTGGATCACTATGGCCGACTTT 60 Query 65 CGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATT 113 || |||| || | ||| |||| || ||||||| ||||| ||||| Sbjct 61 CGTTTCTGATCGATCTGTCAATCTCTCAGTCAAGCAATCTTTTACCATT 109 >seq43888 Length=127 Score = 71.6 bits (78), Expect = 1e-10 Identities = 75/99 (76%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 ||||||||||||||| ||| || |||||||||| || | | ||||||||||| || Sbjct 29 TACCTTTTATCCGTTAAGCAATAGCCCTTCCATACAGCACTATTGGATCACTATGGCCGA 88 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGC 99 |||||| |||| || | ||| |||| || |||||| Sbjct 89 CTTTCGTCTCTGATCGATCTGTCAATCTCTCAGTCAAGC 127 >seq42300 Length=127 Score = 71.6 bits (78), Expect = 1e-10 Identities = 83/112 (74%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 ||||||||||||||| ||| || |||||||||| | | | |||| |||||| || Sbjct 112 TACCTTTTATCCGTTAAGCAATAGCCCTTCCATACGGCACTATTGGATTACTATGGCCGA 53 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCAT 112 |||||| |||| || | ||| |||| || ||||||| ||||| |||| Sbjct 52 CTTTCGTCTCTGATCGATCTGTCAATCTCTCAGTCAAGCAATCTTTTACCAT 1 >seq3063 Length=127 Score = 71.6 bits (78), Expect = 1e-10 Identities = 83/112 (74%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 2 ACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTGC 61 |||||||||||||| ||| || |||||||||| | | | ||||||||||| || | Sbjct 127 ACCTTTTATCCGTTAAGCAATAGCCCTTCCATACGGCACTATTGGATCACTATGGCCGAC 68 Query 62 TTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATT 113 ||| | |||| || | ||| |||| || ||||||| ||||| ||||| Sbjct 67 TTTTGTCTCTGATCGATCTGTCAATCTCTCAGTCAAGCAATCTTTTACCATT 16 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 351761043700