Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20culbertsoni_20[genbank_20GCA_5F000826265.1_202015-01- 06] 72,411 sequences; 55,543,795 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq70274 129 6e-28 seq68216 129 6e-28 >seq70274 Length=4552 Score = 129 bits (142), Expect = 6e-28 Identities = 153/204 (75%), Gaps = 19/204 (9%) Strand=Plus/Minus Query 5 CCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC-----------TTTGC 53 |||| | ||||| |||||||||||||| ||||||||||||| | ||| Sbjct 4545 CCAGATCGTTTACCGTGAAAAAATTAGAGTGTTCAAAGCAGGCAGATTTAACCATTCTGC 4486 Query 54 T--CGAATACATTACCATGGAATAATAGAATAGGACG-TGCGGTTCTATTT---TGTAGG 107 ||||||||||| ||||| ||||| |||||||| || | |||||| ||| || Sbjct 4485 CACCGAATACATTAGCATGGGATAATGAAATAGGACCCTGTCCTCCTATTTACGTGTTGG 4426 Query 108 TTTCT-AGGACCGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGT 166 ||| | |||||| |||||||| |||| ||||||| ||||| | | |||| |||||| Sbjct 4425 TTTTTGAGGACCAGG-GTAATGATTAATAGGGATAGTTGGGGGCATTAATATTTAATTGT 4367 Query 167 CAAAGGTGAAATTCTTGGATTTAT 190 || ||||||||||||||||||||| Sbjct 4366 CAGAGGTGAAATTCTTGGATTTAT 4343 >seq68216 Length=4736 Score = 129 bits (142), Expect = 6e-28 Identities = 153/204 (75%), Gaps = 19/204 (9%) Strand=Plus/Plus Query 5 CCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC-----------TTTGC 53 |||| | ||||| |||||||||||||| ||||||||||||| | ||| Sbjct 8 CCAGATCGTTTACCGTGAAAAAATTAGAGTGTTCAAAGCAGGCAGATTTAACCATTCTGC 67 Query 54 T--CGAATACATTACCATGGAATAATAGAATAGGACG-TGCGGTTCTATTT---TGTAGG 107 ||||||||||| ||||| ||||| |||||||| || | |||||| ||| || Sbjct 68 CACCGAATACATTAGCATGGGATAATGAAATAGGACCCTGTCCTCCTATTTACGTGTTGG 127 Query 108 TTTCT-AGGACCGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGT 166 ||| | |||||| |||||||| |||| ||||||| ||||| | | |||| |||||| Sbjct 128 TTTTTGAGGACCAGG-GTAATGATTAATAGGGATAGTTGGGGGCATTAATATTTAATTGT 186 Query 167 CAAAGGTGAAATTCTTGGATTTAT 190 || ||||||||||||||||||||| Sbjct 187 CAGAGGTGAAATTCTTGGATTTAT 210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511640841440