Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20culbertsoni_20[genbank_20GCA_5F000826265.1_202015-01- 06] 72,411 sequences; 55,543,795 total letters Query= AAMG01001946.1 Length=179 Score E Sequences producing significant alignments: (Bits) Value seq65317 78.8 9e-13 seq56624 75.2 1e-11 seq30636 75.2 1e-11 >seq65317 Length=127 Score = 78.8 bits (86), Expect = 9e-13 Identities = 78/101 (77%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||| ||| || |||||||||| | | || | ||||||||||| || ||||||| ||| Sbjct 118 GTTAAGCAATAGCCCTTCCATACGGCACTATTGGATCACTATGGCCGACTTTCGCCTCTG 59 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATT 124 |||| | |||| |||| ||||||||| | ||| | ||||| Sbjct 58 ATCGATCTGTCAATCTCTCAGTCAAGCAATCTTTTACCATT 18 >seq56624 Length=127 Score = 75.2 bits (82), Expect = 1e-11 Identities = 77/101 (76%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||| ||| || |||||||||| | | || | ||||||||||| || |||||| ||| Sbjct 9 GTTAAGCAATAGCCCTTCCATACGGCACTATTGGATCACTATGGCCGACTTTCGTTTCTG 68 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATT 124 |||| | |||| |||| ||||||||| | ||| | ||||| Sbjct 69 ATCGATCTGTCAATCTCTCAGTCAAGCAATCTTTTACCATT 109 >seq30636 Length=127 Score = 75.2 bits (82), Expect = 1e-11 Identities = 77/101 (76%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||| ||| || |||||||||| | | || | ||||||||||| || |||||| ||| Sbjct 18 GTTAAGCAATAGCCCTTCCATACGGCACTATTGGATCACTATGGCCAACTTTCGTCTCTG 77 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATT 124 |||| | |||| |||| ||||||||| | ||| | ||||| Sbjct 78 ATCGATCTGTCAATCTCTCAGTCAAGCAATCTTTTACCATT 118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 473267778332