Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20culbertsoni_20[genbank_20GCA_5F000826265.1_202015-01- 06] 72,411 sequences; 55,543,795 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq51349 95.1 3e-17 seq26542 93.3 1e-16 seq46636 89.7 1e-15 seq43354 89.7 1e-15 seq4464 89.7 1e-15 seq2869 89.7 1e-15 seq66702 87.8 4e-15 seq17464 87.8 4e-15 seq23822 86.0 2e-14 seq63907 80.6 7e-13 seq21488 80.6 7e-13 seq17655 80.6 7e-13 seq10085 78.8 2e-12 seq17755 77.0 8e-12 seq17268 77.0 8e-12 seq63976 73.4 1e-10 >seq51349 Length=127 Score = 95.1 bits (104), Expect = 3e-17 Identities = 94/118 (80%), Gaps = 3/118 (3%) Strand=Plus/Plus Query 47 ATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTC-TGGAC 105 |||| |||| |||||||||| ||||||| ||||||||||| | || || | ||| | Sbjct 3 ATCAAGCTTTCGCCCATTGTCAAATATTCTCCACTGCTGCC-CTTTTAAAAGACTTGGGC 61 Query 106 CGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCT 163 || || ||||| ||| |||||||| |||| |||||| |||||||| | ||||||| || Sbjct 62 CG-GTTTCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCT 118 >seq26542 Length=127 Score = 93.3 bits (102), Expect = 1e-16 Identities = 90/112 (80%), Gaps = 3/112 (3%) Strand=Plus/Minus Query 53 CTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTC-TGGACCGTGTC 111 ||| |||||||||| ||||||| ||||||||||| | || || | ||| |||| | Sbjct 127 CTTTCGCCCATTGTCAAATATTCTCCACTGCTGCC-CTTTTAAAAGACTTGGGCCGT-TT 70 Query 112 TCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCT 163 ||||||||| |||||||| |||| |||||| |||||||| | ||||||| || Sbjct 69 TCAGTTCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCT 18 >seq46636 Length=127 Score = 89.7 bits (98), Expect = 1e-15 Identities = 93/118 (79%), Gaps = 3/118 (3%) Strand=Plus/Minus Query 47 ATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTC-TGGAC 105 |||| |||| |||||||||| ||||||| ||||||||||| | || || | | | | Sbjct 119 ATCAAGCTTTCGCCCATTGTCAAATATTCTCCACTGCTGCC-CTTTTAAAAGACTTTGGC 61 Query 106 CGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCT 163 ||| | ||||| ||| |||||||| |||| |||||| |||||||| | ||||||| || Sbjct 60 CGT-TTTCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCT 4 >seq43354 Length=127 Score = 89.7 bits (98), Expect = 1e-15 Identities = 93/118 (79%), Gaps = 3/118 (3%) Strand=Plus/Plus Query 47 ATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTC-TGGAC 105 |||| |||| |||||||||| ||||||| ||||||||||| | || || | | | | Sbjct 9 ATCAAGCTTTCGCCCATTGTCAAATATTCTCCACTGCTGCC-CTTTTAAAAGACTTAGGC 67 Query 106 CGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCT 163 ||| | ||||| ||| |||||||| |||| |||||| |||||||| | ||||||| || Sbjct 68 CGT-TTTCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCT 124 >seq4464 Length=127 Score = 89.7 bits (98), Expect = 1e-15 Identities = 85/105 (81%), Gaps = 3/105 (3%) Strand=Plus/Plus Query 47 ATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTC-TGGAC 105 |||| |||| |||||||||| ||||||| ||||||||||| || || || | ||| | Sbjct 22 ATCAAGCTTTCGCCCATTGTCAAATATTCTCCACTGCTGCC-CCTTTAAAAGACTTGGGC 80 Query 106 CGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTA 150 ||| | ||||| ||| |||||||| |||| |||||| |||||||| Sbjct 81 CGT-TTTCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTA 124 >seq2869 Length=127 Score = 89.7 bits (98), Expect = 1e-15 Identities = 93/118 (79%), Gaps = 3/118 (3%) Strand=Plus/Plus Query 47 ATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTC-TGGAC 105 |||| |||| |||||||||| ||||||| ||||||||||| | || || | ||| | Sbjct 5 ATCAAGCTTTCGCCCATTGTCAAATATTCTCCACTGCTGCC-CTTTTAAAAGACTTGGGC 63 Query 106 CGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCT 163 || | ||||| ||| |||||||| |||| |||||| |||||||| | ||||||| || Sbjct 64 TGT-TTTCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCT 120 >seq66702 Length=185 Score = 87.8 bits (96), Expect = 4e-15 Identities = 111/148 (75%), Gaps = 5/148 (3%) Strand=Plus/Minus Query 19 GCCTTCT--TCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCC 76 ||||||| ||| |||| ||| || |||| |||| ||||||||| ||||||| Sbjct 171 GCCTTCTGATCACCCACGTAACATTACTCGATCAAGCTTTCGCCCATTGCCAAATATTCT 112 Query 77 CCACTGCTGCCTCCCGTAGGAGTC-TGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATC 135 ||||||||||| | || || | ||| |||| | ||||| ||| ||| |||| |||| Sbjct 111 CCACTGCTGCC-CTTTTAAAAGACTTGGGCCGT-TTTCAGTCCCAATGTAGCTGATCATT 54 Query 136 CTCTCAGACCAGCTAGGGATCGTCGCCT 163 |||||| |||||||| | ||||||| || Sbjct 53 CTCTCAAACCAGCTAAGCATCGTCGGCT 26 >seq17464 Length=127 Score = 87.8 bits (96), Expect = 4e-15 Identities = 89/112 (79%), Gaps = 3/112 (3%) Strand=Plus/Plus Query 47 ATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTG-CCTCCCGTAGGAGTCTGGAC 105 |||| |||| |||||||||| ||||||| ||||||||| ||| | | || | ||| | Sbjct 18 ATCAAGCTTTCGCCCATTGTCAAATATTCTCCACTGCTGCCCTTTTGAAAGACT-TGGGC 76 Query 106 CGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCG 157 ||| | ||||| ||| |||||||| |||| |||||| |||||||| | |||| Sbjct 77 CGT-TTTCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCG 127 >seq23822 Length=127 Score = 86.0 bits (94), Expect = 2e-14 Identities = 91/116 (78%), Gaps = 3/116 (3%) Strand=Plus/Minus Query 49 CAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTC-TGGACCG 107 || |||| |||||||||| ||||||| ||||||||||| | || || | ||| ||| Sbjct 127 CAAGCTTTCGCCCATTGTCAAATATTCTCCACTGCTGCC-CTTTTAAAAGACTTGGGCCG 69 Query 108 TGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCT 163 | | | ||| ||| |||||||| |||| |||||| |||||||| | ||||||| || Sbjct 68 T-TTTTAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCT 14 >seq63907 Length=127 Score = 80.6 bits (88), Expect = 7e-13 Identities = 85/108 (79%), Gaps = 3/108 (3%) Strand=Plus/Minus Query 57 CGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTC-TGGACCGTGTCTCAG 115 |||||||||| ||||||| ||||||||||| | || || | ||| |||| | |||| Sbjct 126 CGCCCATTGTCAAATATTCTCCACTGCTGCC-CTTTTAAAAGACTTGGGCCGT-TTTCAG 69 Query 116 TTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCT 163 | || |||||||| |||| |||||| |||||||| | ||||||| || Sbjct 68 TCCCGATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCT 21 >seq21488 Length=127 Score = 80.6 bits (88), Expect = 7e-13 Identities = 83/105 (79%), Gaps = 3/105 (3%) Strand=Plus/Minus Query 47 ATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCC-TCCCGTAGGAGTCTGGAC 105 |||| |||| |||||||||| ||||||| ||||||||||| | | || | ||| | Sbjct 105 ATCAAGCTTTCGCCCATTGTCAAATATTCTCCACTGCTGCCATTTTAAAAGACT-TGGGC 47 Query 106 CGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTA 150 ||| | ||||| ||| |||||||| |||| |||||| |||||||| Sbjct 46 CGT-TTTCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTA 3 >seq17655 Length=127 Score = 80.6 bits (88), Expect = 7e-13 Identities = 85/108 (79%), Gaps = 3/108 (3%) Strand=Plus/Plus Query 57 CGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTC-TGGACCGTGTCTCAG 115 |||||||||| ||||||| ||||||||||| | || || | ||| |||| | |||| Sbjct 3 CGCCCATTGTCAAATATTCTCCACTGCTGCC-CTTTTAAAAGACTTGGGCCGT-TTTCAG 60 Query 116 TTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCT 163 | | | |||||||| |||| |||||| |||||||| | ||||||| || Sbjct 61 TCCTAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCT 108 >seq10085 Length=127 Score = 78.8 bits (86), Expect = 2e-12 Identities = 84/107 (79%), Gaps = 3/107 (3%) Strand=Plus/Minus Query 58 GCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTC-TGGACCGTGTCTCAGT 116 ||||||||| ||||||| ||||||||||| | || || | ||| |||| | ||||| Sbjct 127 GCCCATTGTCAAATATTCTCCACTGCTGCC-CTTTTAAAAGACTTGGGCCGT-TTTCAGT 70 Query 117 TCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCT 163 ||| ||||||| |||| |||||| |||||||| | ||||||| || Sbjct 69 CCCAACGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCT 23 >seq17755 Length=127 Score = 77.0 bits (84), Expect = 8e-12 Identities = 83/106 (78%), Gaps = 3/106 (3%) Strand=Plus/Plus Query 59 CCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTC-TGGACCGTGTCTCAGTT 117 |||||||| ||||||| ||||||||||| | || || | ||| |||| | ||||| Sbjct 1 CCCATTGTCAAATATTCTCCACTGCTGCC-CTTTTAAAAGACTTGGGCCGT-TTTCAGTC 58 Query 118 CCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCT 163 ||| | |||||| |||| |||||| |||||||| | ||||||| || Sbjct 59 CCAATATGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCT 104 >seq17268 Length=127 Score = 77.0 bits (84), Expect = 8e-12 Identities = 96/128 (75%), Gaps = 3/128 (2%) Strand=Plus/Plus Query 69 AATATTCCCCACTGCTGCCTCCCGTAGGAGTC-TGGACCGTGTCTCAGTTCCAGTGTGGC 127 ||||||| ||||||||||| | || || | ||| |||| | ||||| ||| |||||| Sbjct 2 AATATTCTCCACTGCTGCC-CTTTTAAAAGACTTGGGCCGT-TTTCAGTCCCAATGTGGC 59 Query 128 TGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACT 187 || | || |||||| |||||||| | ||||||| || | || ||||| | ||||| Sbjct 60 TGATTATTCTCTCAAACCAGCTAAGCATCGTCGGCTTGTTGAATAATTACTACAACAACT 119 Query 188 AGCTAATC 195 | |||||| Sbjct 120 ACCTAATC 127 >seq63976 Length=127 Score = 73.4 bits (80), Expect = 1e-10 Identities = 81/104 (78%), Gaps = 3/104 (3%) Strand=Plus/Minus Query 61 CATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTC-TGGACCGTGTCTCAGTTCC 119 |||||| ||||||| ||||||||||| | || || | ||| |||| | ||||| || Sbjct 127 CATTGTCAAATATTCTCCACTGCTGCC-CTTTTAAAAGACTTGGGCCGT-TTTCAGTCCC 70 Query 120 AGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCT 163 | ||| |||| |||| |||||| |||||||| | ||||||| || Sbjct 69 AATGTTGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCT 26 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1221514847936