Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20culbertsoni_20[genbank_20GCA_5F000826265.1_202015-01- 06] 72,411 sequences; 55,543,795 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq21029 178 2e-42 seq64899 125 1e-26 seq68083 116 7e-24 seq67076 113 9e-23 seq57989 102 2e-19 >seq21029 Length=397 Score = 178 bits (196), Expect = 2e-42 Identities = 122/138 (88%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| |||||||||||||||| ||| | |||||||||||||||| ||||| Sbjct 372 CCTGGGCCGATAGGTCTGGGTAATCTTTGCAAATTTAATCGTGCTGGGGATAGATCATTG 313 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| ||||||||||||||| ||||||||||||| ||||||||| |||||||||| Sbjct 312 TAATTATTGATCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGATT 253 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 252 ACGTCCCTGCCCTTTGTA 235 >seq64899 Length=139 Score = 125 bits (138), Expect = 1e-26 Identities = 77/82 (94%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 103 GGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGC 162 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 130 GGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGC 71 Query 163 TACACTGACAGAGCCAACGAGT 184 |||||||| | |||||||| Sbjct 70 TACACTGATTAATTCAACGAGT 49 >seq68083 Length=5301 Score = 116 bits (128), Expect = 7e-24 Identities = 75/82 (91%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 103 GGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGC 162 |||||||||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 252 GGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACACGTGC 311 Query 163 TACACTGACAGAGCCAACGAGT 184 |||||||| | |||||||| Sbjct 312 TACACTGATTAATTCAACGAGT 333 >seq67076 Length=521 Score = 113 bits (124), Expect = 9e-23 Identities = 74/82 (90%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 103 GGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGC 162 ||||||||||||||||||||||||||| |||||||||||||||||||||||||| || || Sbjct 431 GGAAGTTTGAGGCAATAACAGGTCTGTTATGCCCTTAGATGTTCTGGGCCGCACACGTGC 490 Query 163 TACACTGACAGAGCCAACGAGT 184 |||||||| | |||||||| Sbjct 491 TACACTGATTAATTCAACGAGT 512 >seq57989 Length=111 Score = 102 bits (112), Expect = 2e-19 Identities = 73/83 (88%), Gaps = 1/83 (1%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||||||| ||| | || | ||||||||||||||||||||||||||| Sbjct 83 GCTTCTTAGAGGGACTGCTGGCGCCTAGTCAGCGGAAGTTTGAGGCAATAACAGGTCTGT 24 Query 130 GATGCCCTTAGATGTTCTGGGCC 152 ||||||||||||||||||||||| Sbjct 23 GATGCCCTTAGATGTTCTGGGCC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946514123008